BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1227656	89 (0.910)	10 (0.110)	8/148	NT	10.7%	coding (125/489 nt)	def1	Peptide deformylase 1
*	?	USA300TCH1516_ALE	= 1227672	85 (0.930)	10 (0.110)	8/148	NT	10.7%	coding (141/489 nt)	def1	Peptide deformylase 1

Only 100 of 146 total aligned reads displayed.

CTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTG  >  USA300TCH1516_ALE/1227566‑1227745

cTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA                                                                                           >  1:894523‑M1/1‑91 (MQ=255)

cTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACA                                                                                           >  1:2306772‑M1/1‑91 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:4037335/91‑1 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:1881918/91‑1 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:663010/91‑1 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:144176/91‑1 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:2731274/91‑1 (MQ=255)

 tATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaa                                                                                          <  1:893108/91‑1 (MQ=255)

   ttttAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACaaga                                                                                        >  1:3124033/1‑91 (MQ=255)

   ttttAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAAGGTATGCACaaga                                                                                        <  1:3167906/91‑1 (MQ=255)

      tAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgc                                                                                     <  1:865559/91‑1 (MQ=255)

      tAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgc                                                                                     <  1:866008/91‑1 (MQ=255)

      tAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgc                                                                                     >  1:3035523/1‑91 (MQ=255)

      tAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgc                                                                                     <  1:690803/91‑1 (MQ=255)

      tAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgc                                                                                     <  1:3355822/91‑1 (MQ=255)

       aaCGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgct                                                                                    >  1:2294562/1‑91 (MQ=255)

       aaCGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAgct                                                                                    >  1:640998/1‑91 (MQ=255)

           aaaaaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGctgctg                                                                                <  1:2653452/91‑1 (MQ=255)

            aaaaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagc                                                                               <  1:449781‑M1/91‑13 (MQ=255)

            aaaaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTgg                                                                               <  1:2151383/91‑1 (MQ=255)

            aaaaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTgg                                                                               >  1:1491605/1‑91 (MQ=255)

             aaaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagct                                                                              <  1:410158‑M1/91‑14 (MQ=255)

              aaaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCt                                                                             <  1:3323068/91‑1 (MQ=255)

               aaGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagcttc                                                                            <  1:2934131‑M1/91‑16 (MQ=255)

                  cgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtg                                                                         <  1:2175879‑M2/91‑3 (MQ=255)

                  cgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtg                                                                         <  1:883125‑M2/91‑3 (MQ=255)

                  cgcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtg                                                                         <  1:584033‑M2/91‑3 (MQ=255)

                   gcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgt                                                                        <  1:240231‑M2/91‑4 (MQ=255)

                   gcAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgt                                                                        <  1:2813916‑M2/91‑4 (MQ=255)

                   gcAAGCAGTGAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgt                                                                        >  1:3979408‑M2/1‑88 (MQ=255)

                    cAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtg                                                                       >  1:1359309‑M2/1‑87 (MQ=255)

                     aaGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtgc                                                                      <  1:2177395‑M2/91‑6 (MQ=255)

                     aaGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTAtgtgc                                                                      >  1:476959‑M2/1‑86 (MQ=255)

                        cAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagcttcttgtgcata                                                                   <  1:735077‑M1/91‑25 (MQ=255)

                         aGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagcttcttgtgcatac                                                                  <  1:1560184‑M1/91‑26 (MQ=255)

                         aGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCt                                                                  <  1:984350/91‑1 (MQ=255)

                         aGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCt                                                                  <  1:3829143/91‑1 (MQ=255)

                         aGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCt                                                                  <  1:4039013/91‑1 (MQ=255)

                         aGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCt                                                                  <  1:1086257/91‑1 (MQ=255)

                           ttAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAtaagccagcagcttcttgtgcatacat                                                                <  1:2187613‑M1/91‑28 (MQ=255)

                            tAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCaa                                                               <  1:110896/91‑1 (MQ=255)

                              aaaCATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAAt                                                             <  1:3388269/91‑1 (MQ=255)

                                aCATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTa                                                           <  1:3290543/91‑1 (MQ=255)

                                    ttGCTGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAAGTAATCa                                                       <  1:3220999/91‑1 (MQ=255)

                                    ttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCa                                                       >  1:3346603/1‑91 (MQ=255)

                                    ttGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCa                                                       >  1:3345671/1‑91 (MQ=255)

                                             cGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCa                                              <  1:3826098/91‑1 (MQ=255)

                                               ttAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAg                                            >  1:2235453/1‑91 (MQ=255)

                                               ttAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAg                                            >  1:2235243/1‑91 (MQ=255)

                                                tAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGt                                           <  1:3988176/91‑1 (MQ=255)

                                                 aaaaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTg                                          <  1:3920823/91‑1 (MQ=255)

                                                   aaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGTAAGTGGc                                        >  1:2064330/1‑91 (MQ=255)

                                                   aaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGc                                        >  1:1073728/1‑91 (MQ=255)

                                                   aaaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGc                                        <  1:3960769/91‑1 (MQ=255)

                                                    aaGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCa                                       <  1:2218075/91‑1 (MQ=255)

                                                     aGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCaa                                      >  1:369821/1‑91 (MQ=255)

                                                        ttattaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAatta                                   >  1:2887958/1‑91 (MQ=255)

                                                         tattaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAattat                                  >  1:2723321/1‑91 (MQ=255)

                                                           ttaCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAattaaat                                <  1:4011211/91‑4 (MQ=255)

                                                            taCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGa                               <  1:2687166/91‑1 (MQ=255)

                                                            taCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGa                               <  1:2677294/91‑1 (MQ=255)

                                                            taCAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGa                               >  1:2488353/1‑91 (MQ=255)

                                                                aGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatg                           <  1:3897422/91‑1 (MQ=255)

                                                                  aTTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatgga                         >  1:2268321/1‑91 (MQ=255)

                                                                    ttAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaa                       >  1:1677974/1‑91 (MQ=255)

                                                                       gaagaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatgg                    >  1:102456/1‑91 (MQ=255)

                                                                       gaagaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatgg                    >  1:1049672/1‑91 (MQ=255)

                                                                       gaagaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatgg                    >  1:1813248/1‑91 (MQ=255)

                                                                        aagaTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATatggaaatgga                   <  1:2951309/91‑1 (MQ=255)

                                                                           aTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAgg                <  1:540344/91‑1 (MQ=255)

                                                                           aTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAgg                <  1:962285/91‑1 (MQ=255)

                                                                           aTACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAgg                <  1:962215/91‑1 (MQ=255)

                                                                             aCAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGat              >  1:3942825/1‑91 (MQ=255)

                                                                              cAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGatt             <  1:3616618/91‑1 (MQ=255)

                                                                               aaTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGatta            <  1:2948744/91‑1 (MQ=255)

                                                                                aTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattat           <  1:2100149/91‑1 (MQ=255)

                                                                                aTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattat           >  1:2592792/1‑91 (MQ=255)

                                                                                aTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattat           <  1:366188/91‑1 (MQ=255)

                                                                                aTGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattat           <  1:366582/91‑1 (MQ=255)

                                                                                 tGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattatt          <  1:2039264/91‑1 (MQ=255)

                                                                                 tGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattatt          >  1:3446772/1‑91 (MQ=255)

                                                                                 tGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGattatt          <  1:752024/91‑1 (MQ=255)

                                                                                  gTATGCACAAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaact         <  1:1559732‑M2/91‑67 (MQ=255)

                                                                                  gTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGAttatta         >  1:1711990/1‑91 (MQ=255)

                                                                                  gTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGAttatta         <  1:3551850/91‑1 (MQ=255)

                                                                                   tATGCACAAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactg        <  1:735077‑M2/91‑68 (MQ=255)

                                                                                      gCACAtaagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgctt     >  1:3822120‑M1/1‑5 (MQ=255)

                                                                                      gCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAAc     <  1:1593817/91‑1 (MQ=255)

                                                                                      gCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAAc     >  1:915976/1‑91 (MQ=255)

                                                                                       cacataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttg    >  1:1359309‑M1/1‑4 (MQ=255)

                                                                                       cacaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGTAGGATTATTACAACt    <  1:2179567/91‑1 (MQ=255)

                                                                                        acataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgc   <  1:240231‑M1/91‑89 (MQ=255)

                                                                                        acaAGAAGCTGCTGGCTTAtgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgc   <  1:1918713‑M2/91‑73 (MQ=255)

                                                                                        acaAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACtt   >  1:3068725/1‑91 (MQ=255)

                                                                                         cataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcg  <  1:2175879‑M1/91‑90 (MQ=255)

                                                                                         cataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcg  <  1:883125‑M1/91‑90 (MQ=255)

                                                                                         cataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcg  <  1:584033‑M1/91‑90 (MQ=255)

                                                                                         cataagccagcagcttcttgtgcatacattgtatcttctaaatcttgtaataatctttttaacgaatcatcaaatgttttaactgcttgcg  <  1:2175878‑M1/91‑90 (MQ=255)

                                                                                         caAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCCAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTg  >  1:3284384/1‑91 (MQ=255)

                                                                                         caAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTg  <  1:621712/91‑1 (MQ=255)

CTATTTTAACGAAAAAAGCGCAAGCAGTTAAAACATTTGATGATTCGTTAAAAAGATTATTACAAGATTTAGAAGATACAATGTATGCACAAGAAGCTGCTGGCTTATGTGCACCTCAAATTAATCAGTCATTGCAAGTGGCAATTATTGATATGGAAATGGAAGGATTATTACAACTTG  >  USA300TCH1516_ALE/1227566‑1227745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.