| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1236587 | 71 (0.720) | 10 (0.110) | 6/144 | NT | 11.8% | intergenic (+101/+280) | thiN/rpmB | Thiamine pyrophosphokinase/50S ribosomal protein L28 |
| ? | USA300TCH1516_ALE | = 1236607 | 86 (0.970) | intergenic (+121/+260) | thiN/rpmB | Thiamine pyrophosphokinase/50S ribosomal protein L28 | |||||
ATTCAAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1236491‑1236587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcacgcCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT < USA300TCH1516_ALE/1236607‑1236518 ATTCAAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAA < 1:1291757/91‑1 TTCAAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAAT > 1:451459/1‑91 CAAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCA > 1:307734/1‑91 AAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCAC < 1:303421/91‑1 AAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCAC < 1:302282/91‑1 ATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC < 1:66298/91‑1 ATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC > 1:1398181/1‑91 ATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC > 1:3282113/1‑91 ATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC < 1:2518460/91‑1 TAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTA < 1:3615907/91‑1 TAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTA < 1:3249357/91‑1 AAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACA < 1:1798984/91‑1 AGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAG < 1:1312242/91‑1 AGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAG < 1:2109972/91‑1 AGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAG < 1:2109971/91‑1 GTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAGC < 1:2562135/91‑1 GTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAGC < 1:3569191/91‑1 GCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAGCGT < 1:284148/91‑1 ATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCCATAATCTTCATTAATTACAGCGTGATTCATCT < 1:1353928/91‑1 AATCACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTC > 1:3328917/1‑91 ATCACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCA > 1:2046120/1‑91 ATCACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCA < 1:3358790/91‑1 ATCACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCA > 1:2639339/1‑91 ACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGC > 1:1775635/1‑91 ACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGC > 1:1442593/1‑91 ACGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGC > 1:232650/1‑91 CGCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCA < 1:1738983/91‑1 GCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCAC > 1:2746537/1‑91 GCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCAC < 1:2657471/91‑1 GCCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCAC < 1:2657183/91‑1 CCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT > 1:1884873/1‑91 CCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT > 1:1884152/1‑91 CCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT > 1:3914140/1‑91 CCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT < 1:3959771/91‑1 CCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT > 1:452920/1‑91 ATTCAAATTTGTGAGGATTTTTAATAAAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1236491‑1236587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcacgcCATAATCTTCATTAATTACAGCGTGATTCATCTATTATTATGTTATAAATTCTATCTATAAACGTCACTTTATTAAATAACTCATGCACT < USA300TCH1516_ALE/1236607‑1236518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |