BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1236587	71 (0.720)	10 (0.110)	6/144	NT	11.8%	intergenic (+101/+280)	thiN/rpmB	Thiamine pyrophosphokinase/50S ribosomal protein L28
*	?	USA300TCH1516_ALE	= 1236607	86 (0.970)	10 (0.110)	6/144	NT	11.8%	intergenic (+121/+260)	thiN/rpmB	Thiamine pyrophosphokinase/50S ribosomal protein L28

Only 100 of 119 total aligned reads displayed.

AAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAATTTGA  >  USA300TCH1516_ALE/1236517‑1236696

aaGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATg                                                                                           >  1:419035/1‑91 (MQ=255)

 aGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGg                                                                                          >  1:1884152‑M2/1‑90 (MQ=255)

 aGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGg                                                                                          >  1:1884873‑M2/1‑90 (MQ=255)

 aGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGg                                                                                          >  1:452920‑M2/1‑90 (MQ=255)

 aGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGg                                                                                          >  1:3914140‑M2/1‑90 (MQ=255)

 aGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGg                                                                                          <  1:3959771‑M2/91‑2 (MQ=255)

  gTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgc                                                                                         <  1:2657183‑M2/91‑3 (MQ=255)

  gTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgc                                                                                         <  1:2657471‑M2/91‑3 (MQ=255)

  gTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgc                                                                                         >  1:2746537‑M2/1‑89 (MQ=255)

   tGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcg                                                                                        <  1:1738983‑M2/91‑4 (MQ=255)

    gCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgt                                                                                       >  1:1775635‑M2/1‑87 (MQ=255)

    gCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgt                                                                                       >  1:1442593‑M2/1‑87 (MQ=255)

       tGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgtgat                                                                                    >  1:2639339‑M2/1‑84 (MQ=255)

       tGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgtgat                                                                                    <  1:3358790‑M2/91‑8 (MQ=255)

       tGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgtgat                                                                                    >  1:2046120‑M2/1‑84 (MQ=255)

        gAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGgcgtgatt                                                                                   >  1:3328917‑M2/1‑83 (MQ=255)

         aGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGAttt                                                                                  <  1:1150919/91‑1 (MQ=255)

          gTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATtta                                                                                 <  1:2001963/91‑1 (MQ=255)

           ttATTTAATAAAGTGACGTTTATAGATAGGATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATttat                                                                                <  1:14793/91‑1 (MQ=255)

              tttAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTtattat                                                                             >  1:3063872/1‑91 (MQ=255)

              tttAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTtattat                                                                             <  1:107114/91‑1 (MQ=255)

              tttAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTtattat                                                                             >  1:1641269/1‑91 (MQ=255)

               ttAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTattatt                                                                            <  1:2524437/91‑1 (MQ=255)

                taataaAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTACTGAAGATTATGGCGTGATTTATTATTg                                                                           >  1:1218369/1‑91 (MQ=255)

                taataaAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTg                                                                           >  1:2118031/1‑91 (MQ=255)

                  ataaAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGaa                                                                         >  1:1169734/1‑91 (MQ=255)

                   taaAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGaaa                                                                        >  1:2698512/1‑91 (MQ=255)

                    aaaGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAg                                                                       <  1:1401301/91‑1 (MQ=255)

                     aaGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAgg                                                                      <  1:892161/91‑1 (MQ=255)

                       gTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGaa                                                                    >  1:4032296/1‑91 (MQ=255)

                         gACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGaaaa                                                                  <  1:3609415/91‑1 (MQ=255)

                          aCGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAAt                                                                 <  1:745975/91‑1 (MQ=255)

                          aCGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAAt                                                                 >  1:1291099/1‑91 (MQ=255)

                           cGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAAtt                                                                <  1:3576781/91‑1 (MQ=255)

                            gTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTg                                                               >  1:1864970/1‑91 (MQ=255)

                            gTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTg                                                               >  1:1865008/1‑91 (MQ=255)

                               tataGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTCTAg                                                            >  1:3738606/1‑91 (MQ=255)

                                 tagatagaATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGt                                                          >  1:2235756/1‑91 (MQ=255)

                                     tagaATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTa                                                      >  1:2479711/1‑91 (MQ=255)

                                      agaATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAg                                                     <  1:3035616/91‑1 (MQ=255)

                                      agaATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAg                                                     <  1:1682954/91‑1 (MQ=255)

                                       gaATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGt                                                    >  1:3604930/1‑91 (MQ=255)

                                        aaTTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTa                                                   <  1:577231/91‑1 (MQ=255)

                                        aaTTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTa                                                   <  1:1114749/91‑1 (MQ=255)

                                        aaTTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTa                                                   <  1:3915151/91‑1 (MQ=255)

                                         aTTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTAc                                                  <  1:2198343/91‑1 (MQ=255)

                                          tttATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACa                                                 <  1:3264440/91‑1 (MQ=255)

                                           ttATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACAt                                                >  1:3406521/1‑91 (MQ=255)

                                             ataACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTg                                              <  1:4037681/91‑1 (MQ=255)

                                              taACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGa                                             <  1:2264711/91‑1 (MQ=255)

                                               aaCATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGAt                                            <  1:940090/91‑1 (MQ=255)

                                                aCATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGAtt                                           >  1:2696474/1‑91 (MQ=255)

                                                aCATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGAtt                                           >  1:3243276/1‑91 (MQ=255)

                                                aCATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGAtt                                           >  1:3387546/1‑91 (MQ=255)

                                                  ataataataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTa                                         >  1:3113361/1‑91 (MQ=255)

                                                   taataataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTAt                                        <  1:3827522/91‑1 (MQ=255)

                                                   taataataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATCTAt                                        >  1:3349468/1‑91 (MQ=255)

                                                     ataataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTAtgt                                      <  1:4088220/91‑1 (MQ=255)

                                                       aataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTGATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGc                                    <  1:3292091/91‑1 (MQ=255)

                                                       aataGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGAGCTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGc                                    >  1:1965909/1‑91 (MQ=255)

                                                          aGATGAATCACGCTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaat                                 <  1:1353928‑M2/91‑59 (MQ=255)

                                                              gAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATc                             >  1:2227411/1‑91 (MQ=255)

                                                               aaTCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCg                            <  1:4077562/91‑1 (MQ=255)

                                                                aTCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGa                           <  1:1888795/91‑1 (MQ=255)

                                                                aTCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGa                           >  1:3584298/1‑91 (MQ=255)

                                                                aTCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGa                           <  1:791384/91‑1 (MQ=255)

                                                                   aCGCTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgc                        <  1:284148‑M2/91‑68 (MQ=255)

                                                                   aCGCTGTAATTAATGAAGATTATGGCTTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGatat                        <  1:924712/91‑1 (MQ=255)

                                                                   aCGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGatat                        <  1:3867756/91‑1 (MQ=255)

                                                                   aCGCTGTAATTAATGAAGATTATGGCATGATTTATTATTGAAAGGGAAAATGTAGGTCCTAGTACATTGATGTATGTGCCAAAATCGatat                        <  1:924676/91‑1 (MQ=255)

                                                                    cGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATAtt                       >  1:3360265/1‑91 (MQ=255)

                                                                     gCTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcac                      <  1:3569191‑M2/91‑70 (MQ=255)

                                                                     gCTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcac                      <  1:2562135‑M2/91‑70 (MQ=255)

                                                                     gCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTg                      <  1:628134/91‑1 (MQ=255)

                                                                     gCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTg                      <  1:104055/91‑1 (MQ=255)

                                                                     gCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTg                      >  1:2567242/1‑91 (MQ=255)

                                                                      cTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcact                     <  1:1312242‑M2/91‑71 (MQ=255)

                                                                      cTGTAATTAATGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcact                     <  1:2109971‑M2/91‑71 (MQ=255)

                                                                        gTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAAc                   <  1:955135/91‑1 (MQ=255)

                                                                        gTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAAc                   <  1:954146/91‑1 (MQ=255)

                                                                        gTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAAc                   >  1:1524997/1‑91 (MQ=255)

                                                                         taattaatGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcacttta                  <  1:3249357‑M2/91‑74 (MQ=255)

                                                                         taattaatGAAGATTATGgcgtgattcatctattattatgttataaattctatctataaacgtcactttattaaataactcatgcacttta                  <  1:3615907‑M2/91‑74 (MQ=255)

                                                                         taattaatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAAcc                  >  1:1925479/1‑91 (MQ=255)

                                                                          aattaatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAAccc                 <  1:521859/91‑1 (MQ=255)

                                                                           attaatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCa                >  1:876483/1‑91 (MQ=255)

                                                                            ttaatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCAt               <  1:1563703/91‑1 (MQ=255)

                                                                              aatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATaa             <  1:3614684/91‑1 (MQ=255)

                                                                              aatGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATaa             <  1:3631330/91‑1 (MQ=255)

                                                                                tGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGt           <  1:2375668/91‑1 (MQ=255)

                                                                                tGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGt           <  1:518177/91‑1 (MQ=255)

                                                                                 gAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTc          <  1:3477849/91‑1 (MQ=255)

                                                                                 gAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTc          >  1:134803/1‑91 (MQ=255)

                                                                                  aaGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTcc         <  1:1427519/91‑1 (MQ=255)

                                                                                   aGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCa        <  1:2356573/91‑1 (MQ=255)

                                                                                    gATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCaa       <  1:16232/91‑1 (MQ=255)

                                                                                     aTTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAAt      <  1:782099/91‑1 (MQ=255)

                                                                                        aTGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAATTTg   >  1:3716266/1‑91 (MQ=255)

                                                                                        aTGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAATTTg   >  1:554538/1‑91 (MQ=255)

                                                                                         tGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAATTTGa  <  1:1512041/91‑1 (MQ=255)

AAGTGCATGAGTTATTTAATAAAGTGACGTTTATAGATAGAATTTATAACATAATAATAGATGAATCACGCTGTAATTAATGAAGATTATGGCGTGATTTATTATTGAAAGGAAAATTGTAGGTCCTAGTACATTGATTTATGTGCCAAAATCGATATTGAACCCATAAGTCCAATTTGA  >  USA300TCH1516_ALE/1236517‑1236696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.