| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1255967 = | 82 (0.830) | 10 (0.120) | 6/134 | NT | 14.1% | intergenic (+183/+61) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein |
| ? | USA300TCH1516_ALE | 1256006 = | 53 (0.640) | intergenic (+222/+22) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein | |||||
ATATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1256069‑1255967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAA > USA300TCH1516_ALE/1256006‑1256095 ATATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCA > 1:1577228/1‑91 ATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACT < 1:146524/91‑1 TGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTT < 1:588296/91‑1 GTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCAGTTA > 1:3220281/1‑91 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACaagc > 1:1521489/1‑87 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAG < 1:3357767/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAG < 1:538273/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAG < 1:3072671/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAAGGTTGCTACGCATATATTTAATAAATCTCCT‑AGTCCTTTTCAATGGCACTTAGT < 1:2402510/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAG < 1:118345/91‑1 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGA > 1:3430650/1‑91 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGA < 1:3143282/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATT < 1:472472/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATT > 1:2665725/1‑91 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATT > 1:2665752/1‑91 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTT > 1:9412/1‑91 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTT < 1:698916/91‑1 AAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAAT > 1:626621/1‑91 CTACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATA > 1:1714788/1‑91 CTACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATA > 1:3310634/1‑91 ACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACT > 1:656764/1‑91 ACTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACT > 1:432523/1‑91 CTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTA > 1:948846/1‑91 CTAAGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTA > 1:949941/1‑91 AGTCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACAT > 1:1870995/1‑91 TCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATAT > 1:2807262/1‑91 TCCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATAT > 1:1962346/1‑91 ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAG < 1:820820/91‑1 CTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGT > 1:1877343/1‑91 TTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTA < 1:4121829/91‑1 TTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTA > 1:2738/1‑91 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA > 1:2474210/1‑91 GTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATT < 1:1715290/91‑1 ATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTA < 1:3821677/91‑1 ATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTA < 1:2935669/91‑1 TATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAA < 1:4090593/91‑1 ATATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTCCTTTTCAATGGCACTTAGTAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1256069‑1255967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAA > USA300TCH1516_ALE/1256006‑1256095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |