BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1255967 =	82 (0.830)	10 (0.120)	6/134	NT	14.1%	intergenic (+183/+61)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein
*	?	USA300TCH1516_ALE	1256006 =	53 (0.640)	10 (0.120)	6/134	NT	14.1%	intergenic (+222/+22)	rplS/USA300HOU_RS06250	50S ribosomal protein L19/hypothetical protein

Only 100 of 104 total aligned reads displayed.

TATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAG  >  USA300TCH1516_ALE/1255917‑1256096

  ttCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATttatta                                                                                         <  1:55940/91‑1 (MQ=255)

  tcccTTCTTTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATGAAAAAGGACTTAGTAGATttatta                                                                                         <  1:3922411/89‑1 (MQ=255)

   tCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaa                                                                                        >  1:2331513/1‑91 (MQ=255)

   tCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaa                                                                                        <  1:3450129/91‑1 (MQ=255)

   tCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaa                                                                                        >  1:3212055/1‑91 (MQ=255)

    ccTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTaaa                                                                                       <  1:153052/91‑1 (MQ=255)

         tctATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAatatat                                                                                  >  1:699858/1‑91 (MQ=255)

           tATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGc                                                                                <  1:3841564/91‑1 (MQ=255)

             ttCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGt                                                                              >  1:2172776/1‑91 (MQ=255)

              tCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTa                                                                             >  1:2176066/1‑91 (MQ=255)

               cATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAg                                                                            <  1:4106985/91‑1 (MQ=255)

               cATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAg                                                                            >  1:3450183/1‑91 (MQ=255)

                 tAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCa                                                                          >  1:2309511/1‑91 (MQ=255)

                 tAACGTGTTTGCTC‑AAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCaa                                                                         <  1:2113565/91‑1 (MQ=255)

                 tAACGTGGTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCa                                                                          <  1:636897/91‑1 (MQ=255)

                  aaCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCaa                                                                         <  1:1769388/91‑1 (MQ=255)

                   aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAAc                                                                        <  1:1097217/91‑1 (MQ=255)

                   aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAAc                                                                        <  1:2488929/91‑1 (MQ=255)

                   aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAAc                                                                        <  1:1756501/91‑1 (MQ=255)

                   aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAAc                                                                        <  1:4089534/91‑1 (MQ=255)

                   aCGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAAc                                                                        >  1:505356/1‑91 (MQ=255)

                     gtgtTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACat                                                                      >  1:3466484/1‑91 (MQ=255)

                       gtTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACatta                                                                    >  1:1234528/1‑91 (MQ=255)

                          tGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAttt                                                                 <  1:3369799/91‑1 (MQ=255)

                           gCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAtttt                                                                <  1:3772925/91‑1 (MQ=255)

                            cTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTAttttt                                                               >  1:318898/1‑91 (MQ=255)

                               aaaaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTc                                                            <  1:374923/91‑1 (MQ=255)

                                aaaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCt                                                           >  1:2758872/1‑91 (MQ=255)

                                aaaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATCTATTAAATATATGCGTAGCAACATTATTTTTGTCt                                                           >  1:1237504/1‑91 (MQ=255)

                                 aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                                          >  1:2679168/1‑91 (MQ=255)

                                 aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                                          >  1:40382/1‑91 (MQ=255)

                                 aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                                          <  1:1158382/91‑1 (MQ=255)

                                 aaTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCtt                                                          <  1:1158754/91‑1 (MQ=255)

                                  aTGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTCTTTTTGTCTTg                                                         >  1:1849474/1‑91 (MQ=255)

                                    ggTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGcc                                                       >  1:3909167/1‑91 (MQ=255)

                                     gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc                                                      <  1:3795252/91‑1 (MQ=255)

                                     gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc                                                      <  1:3345759/91‑1 (MQ=255)

                                     gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc                                                      <  1:1442641/91‑1 (MQ=255)

                                     gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc                                                      >  1:2964627/1‑91 (MQ=255)

                                     gTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGccc                                                      >  1:556468/1‑91 (MQ=255)

                                      ttATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCa                                                     <  1:1351496/91‑1 (MQ=255)

                                      ttATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCa                                                     >  1:2676212/1‑91 (MQ=255)

                                       tatataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAt                                                    >  1:2543102/1‑91 (MQ=255)

                                        atataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtc                                                   >  1:1438422/1‑91 (MQ=255)

                                        atataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtc                                                   >  1:554623/1‑91 (MQ=255)

                                         tataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtct                                                  >  1:2103275/1‑91 (MQ=255)

                                          ataAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCAtctc                                                 >  1:3001213/1‑91 (MQ=255)

                                             aaCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTg                                              <  1:2594310/91‑1 (MQ=255)

                                              aCAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGa                                             >  1:1924771/1‑91 (MQ=255)

                                                 aaaaTCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGaaaa                                          <  1:2207910/91‑1 (MQ=255)

                                                  aaatctactaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat                                         >  1:626621‑M2/40‑91 (MQ=255)

                                                  AAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat                                         <  1:698916‑M1/91‑1 (MQ=255)

                                                  AAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaat                                         >  1:9412‑M1/1‑91 (MQ=255)

                                                   AATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata                                        >  1:2665752‑M1/1‑91 (MQ=255)

                                                   AATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata                                        >  1:2665725‑M1/1‑91 (MQ=255)

                                                   AATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaata                                        <  1:472472‑M1/91‑1 (MQ=255)

                                                     TCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaataat                                      >  1:3430650‑M1/1‑91 (MQ=255)

                                                     TCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAaataat                                      <  1:3143282‑M1/91‑1 (MQ=255)

                                                      ctactaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata                                     >  1:1714788‑M2/36‑91 (MQ=255)

                                                      ctactaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata                                     >  1:3310634‑M2/36‑91 (MQ=255)

                                                      CTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAataata                                     <  1:118345‑M1/91‑1 (MQ=255)

                                                        actaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtact                                   >  1:432523‑M2/34‑91 (MQ=255)

                                                        actaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtact                                   >  1:656764‑M2/34‑91 (MQ=255)

                                                        ACTAAGTGCCATTGAAAAGGACT‑AGGAGATTTATTAAATATATGCGTAGCAACCTTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  <  1:2402510‑M1/91‑1 (MQ=255)

                                                         gcttGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  >  1:1521489‑M1/5‑91 (MQ=255)

                                                         ctaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  >  1:948846‑M2/33‑91 (MQ=255)

                                                         ctaagtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  >  1:949941‑M2/33‑91 (MQ=255)

                                                         CTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  <  1:3072671‑M1/91‑1 (MQ=255)

                                                         CTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  <  1:538273‑M1/91‑1 (MQ=255)

                                                         CTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtacta                                  <  1:3357767‑M1/91‑1 (MQ=255)

                                                          TAACTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAAtactac                                 >  1:3220281‑M1/1‑91 (MQ=255)

                                                           AAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACa                                <  1:588296‑M1/91‑1 (MQ=255)

                                                            agtccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACat                               >  1:1870995‑M2/30‑91 (MQ=255)

                                                            AGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACat                               <  1:146524‑M1/91‑1 (MQ=255)

                                                              tccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACatat                             >  1:2807262‑M2/28‑91 (MQ=255)

                                                              tccttttcaatggcacttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACatat                             >  1:1962346‑M2/28‑91 (MQ=255)

                                                              TGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACatat                             >  1:1577228‑M1/1‑91 (MQ=255)

                                                                  aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg                         <  1:1322254/91‑1 (MQ=255)

                                                                  aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg                         <  1:3124551/91‑1 (MQ=255)

                                                                  aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg                         <  1:1323513/91‑1 (MQ=255)

                                                                  aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg                         <  1:1323031/91‑1 (MQ=255)

                                                                  aTTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATg                         >  1:197802/1‑91 (MQ=255)

                                                                     gAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCa                      >  1:3194614/1‑91 (MQ=255)

                                                                       aaaGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCaaa                    >  1:2157856/1‑91 (MQ=255)

                                                                       aaaGGACTTAGCAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCaaa                    <  1:1591160/91‑1 (MQ=255)

                                                                         aGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAata                  <  1:1580737/91‑1 (MQ=255)

                                                                          ggACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAatat                 <  1:1546966/91‑1 (MQ=255)

                                                                           gACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAAtata                >  1:1595010/1‑91 (MQ=255)

                                                                            acttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAg               <  1:820820‑M2/78‑1 (MQ=255)

                                                                             cttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGt              >  1:1877343‑M2/13‑91 (MQ=255)

                                                                              ttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTa             <  1:4121829‑M2/80‑1 (MQ=255)

                                                                               tagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTaa            >  1:2474210‑M2/11‑91 (MQ=255)

                                                                                 gtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAAtt          <  1:1715290‑M2/83‑1 (MQ=255)

                                                                                     atttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTta      <  1:2935669‑M2/87‑1 (MQ=255)

                                                                                     atttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTta      <  1:3821677‑M2/87‑1 (MQ=255)

                                                                                        tATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATaa   <  1:4090593‑M2/90‑1 (MQ=255)

                                                                                         attaAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAg  <  1:3364826/91‑1 (MQ=255)

                                                                                         attaAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAg  <  1:2638482/91‑1 (MQ=255)

                                                                                         attaAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAg  <  1:2638462/91‑1 (MQ=255)

                                                                                         attaAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAg  >  1:2364263/1‑91 (MQ=255)

TATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGGTTATATAAACAAAAATCTACTAAGTGCCATTGAAAAGGACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATAAG  >  USA300TCH1516_ALE/1255917‑1256096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.