| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1262900 = | 95 (0.970) | 7 (0.080) | 5/140 | NT | 7.6% | intergenic (+25/‑202) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN |
| ? | USA300TCH1516_ALE | 1262943 = | 87 (1.010) | intergenic (+68/‑159) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN | |||||
TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262998‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA > USA300TCH1516_ALE/1262943‑1263033 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA > 1:1083111/1‑91TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA > 1:828315/1‑91 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAAT < 1:251973/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAAT > 1:2479024/1‑91 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATG < 1:2239628/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAACTTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG < 1:3948492/91‑1 AACTTGTGTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:2071062/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:1070631/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:985095/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:3231793/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC > 1:1027129/1‑91 AACTTGTATTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:2071339/91‑1 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCT < 1:3676143/91‑1 TTTCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTA > 1:628503/1‑91 CCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTT > 1:4042110/1‑91 CGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 1:2806421/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:1717903/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:14196/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:1241494/1‑91 TACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACC > 1:1397291/1‑91 ATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAA < 1:1307004/91‑1 ATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAA < 1:1307257/91‑1 TGGGCTATTTGTCGTGCGATGAATTTTAGTACGCTTTTCATATTTTGAAAAGGCAAGTTAATTATTTTACCTCCTTCAATAGCTTTCTAAA > 1:3802131/1‑91 TGGGCTATTTGTAGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAA > 1:3171640/1‑91 TGGGCTATTTGTAGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAA > 1:3171617/1‑91 GGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAA < 1:3045571/91‑1 GGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAA < 1:3045570/91‑1 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC > 1:1867998/1‑91 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC < 1:3999738/91‑1 CTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAA > 1:2837595/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:4005976/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:1756095/1‑91 TTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA < 1:3020887/91‑1 TTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTT‑GAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA < 1:43682/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262998‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA > USA300TCH1516_ALE/1262943‑1263033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |