BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1262900 =	95 (0.970)	7 (0.080)	5/140	NT	7.6%	intergenic (+25/‑202)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN
*	?	USA300TCH1516_ALE	1262943 =	87 (1.010)	7 (0.080)	5/140	NT	7.6%	intergenic (+68/‑159)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN

Only 100 of 137 total aligned reads displayed.

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA  >  USA300TCH1516_ALE/1262853‑1263033

cATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAtt                                                                                            <  1:2830585/91‑1 (MQ=255)

cATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAtt                                                                                            >  1:2700475/1‑91 (MQ=255)

  ttattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTg                                                                                          >  1:2932263/1‑91 (MQ=255)

  ttattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTg                                                                                          >  1:3801886/1‑91 (MQ=255)

       aaCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTg                                                                                     >  1:1882680/1‑91 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                  <  1:2241319/91‑1 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                  <  1:1485259/91‑1 (MQ=255)

           gTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGAt                                                                                 >  1:3331999/1‑91 (MQ=255)

           gTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGAt                                                                                 >  1:3331710/1‑91 (MQ=255)

             taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa                                                                               >  1:71523/1‑91 (MQ=255)

              aataaataAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGaa                                                                              >  1:2785507/1‑91 (MQ=255)

               ataaataaAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAt                                                                             >  1:764360/1‑91 (MQ=255)

                    taaaGTTAAAAGATGATATAAATGGCTATGGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAg                                                                        <  1:3323553/91‑1 (MQ=255)

                     aaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                       >  1:93608/1‑91 (MQ=255)

                     aaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                       >  1:2127504/1‑91 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                     <  1:708796/91‑1 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                     >  1:706500/1‑91 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                     <  1:1811501/91‑1 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca                                                                    >  1:2613679/1‑91 (MQ=255)

                          tAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACt                                                                  >  1:1472698/1‑91 (MQ=255)

                           aaaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtt                                                                 >  1:189765/1‑91 (MQ=255)

                           aaaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtt                                                                 >  1:608111/1‑91 (MQ=255)

                            aaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt                                                                <  1:2432884/91‑1 (MQ=255)

                               gatgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTCTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCa                                                             <  1:4135965/91‑1 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                           <  1:3895201/91‑1 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                           <  1:890443/91‑1 (MQ=255)

                                  gatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCatat                                                          >  1:2806148/1‑91 (MQ=255)

                                  gatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCatat                                                          >  1:2622167/1‑91 (MQ=255)

                                   atatAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAtt                                                         >  1:526424/1‑91 (MQ=255)

                                   atatAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAtt                                                         >  1:4013642/1‑91 (MQ=255)

                                    tataAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAttt                                                        >  1:1932108/1‑91 (MQ=255)

                                    tataAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAttt                                                        >  1:2056699/1‑91 (MQ=255)

                                    tataAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAttt                                                        <  1:2789493/91‑1 (MQ=255)

                                    tataAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATAttt                                                        >  1:483281/1‑91 (MQ=255)

                                      taAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTg                                                      <  1:2691356/91‑1 (MQ=255)

                                       aaaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTgg                                                     >  1:3056022/1‑91 (MQ=255)

                                       aaaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTgg                                                     <  1:1311848/91‑1 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTggg                                                    >  1:1931168/1‑90 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa                                                    >  1:1441144/1‑91 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa                                                    >  1:688311/1‑91 (MQ=255)

                                         aTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGaa                                                   <  1:1610370/91‑1 (MQ=255)

                                         aTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGaa                                                   >  1:1107047/1‑91 (MQ=255)

                                          tGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGaaa                                                  <  1:2977358/91‑1 (MQ=255)

                                             cTATAG‑CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACa                                              >  1:2222532/1‑91 (MQ=255)

                                              tataGCCCATTCCATACTTTATAAAAGTATCGGAAATAGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACa                                              >  1:3514139/1‑91 (MQ=255)

                                                 AGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt                                           <  1:3676143‑M1/91‑1 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          <  1:3231793‑M1/91‑1 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          >  1:1027129‑M1/1‑91 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          <  1:985095‑M1/91‑1 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          <  1:1070631‑M1/91‑1 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAACACAAGtt                                          <  1:2071062‑M1/91‑1 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAGTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                        <  1:3948492‑M1/91‑1 (MQ=255)

                                                     CATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAat                                       <  1:2239628‑M1/91‑1 (MQ=255)

                                                      ATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                      >  1:2479024‑M1/1‑91 (MQ=255)

                                                       tttccgatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatta                                     >  1:628503‑M2/36‑91 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatta                                     >  1:828315‑M1/1‑91 (MQ=255)

                                                          ccgatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                  >  1:4042110‑M2/33‑91 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                  <  1:1261364/91‑1 (MQ=255)

                                                           aTACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAtttt                                 <  1:2200874/91‑1 (MQ=255)

                                                           aTACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAtttt                                 <  1:2788062/91‑1 (MQ=255)

                                                           aTACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAtttt                                 >  1:2127613/1‑91 (MQ=255)

                                                           aTACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAtttt                                 <  1:2200854/91‑1 (MQ=255)

                                                            tACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                                >  1:1413405/1‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                                >  1:1241494‑M2/31‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                                >  1:14196‑M2/31‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                                >  1:1717903‑M2/31‑91 (MQ=255)

                                                              tacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcc                              >  1:1397291‑M2/29‑91 (MQ=255)

                                                              cTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcc                              <  1:2942260/91‑1 (MQ=255)

                                                                 tataAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcc                           <  1:1432944/91‑1 (MQ=255)

                                                                 tataAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcc                           <  1:4109365/91‑1 (MQ=255)

                                                                  tataaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcct                          >  1:1081596/4‑91 (MQ=255)

                                                                  tataaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcct                          >  1:1490476/4‑91 (MQ=255)

                                                                  ataAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcct                          <  1:596305/91‑1 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                        <  1:3838643/91‑1 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                        <  1:1164790/91‑1 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                        >  1:2240629/1‑91 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                        <  1:680814/91‑1 (MQ=255)

                                                                     aaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACa                       <  1:560872/91‑1 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                      >  1:1559520/1‑91 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                      <  1:125699/91‑1 (MQ=255)

                                                                       aGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAAt                     <  1:528625/91‑1 (MQ=255)

                                                                       aGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAAt                     <  1:528641/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                  <  1:1949746/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                  <  1:1627612/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                  <  1:3763701/91‑1 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt               >  1:2612273/1‑91 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt               >  1:1772112/1‑91 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt               <  1:2048986/91‑1 (MQ=255)

                                                                              gAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTta              >  1:1118267/1‑91 (MQ=255)

                                                                               aaaTGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTtat             >  1:200743/1‑91 (MQ=255)

                                                                                 atgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATaa           <  1:1307257‑M2/82‑1 (MQ=255)

                                                                                  tgggctatTTGTCGTGCGATGAATTTTAGTACGCTTTTCATATTTTGAAAAGGCAAGTTAATTATTTTACCTCCTTCAATAGCTTTCTaaa          >  1:3802131‑M2/9‑91 (MQ=255)

                                                                                  tgggctatTTGTAGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATaaa          >  1:3171640‑M2/9‑91 (MQ=255)

                                                                                   gggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATaaaa         <  1:3045571‑M2/84‑1 (MQ=255)

                                                                                   gggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATaaaa         <  1:3045570‑M2/84‑1 (MQ=255)

                                                                                    ggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAc        >  1:1867998‑M2/7‑91 (MQ=255)

                                                                                      ctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaa      >  1:2837595‑M2/5‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  1:4005976‑M2/4‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  1:1756095‑M2/4‑91 (MQ=255)

                                                                                         tTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTT‑GAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGaa  <  1:43682‑M2/90‑1 (MQ=255)

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA  >  USA300TCH1516_ALE/1262853‑1263033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.