| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1281507 | 60 (0.610) | 9 (0.100) | 6/146 | NT | 12.4% | coding (33/1704 nt) | proS | Proline‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1281540 | 72 (0.800) | coding (66/1704 nt) | proS | Proline‑‑tRNA ligase | |||||
ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1281411‑1281507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgatgACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAATTATA < USA300TCH1516_ALE/1281540‑1281451 ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCA > 1:924577/1‑91ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCA < 1:908156/91‑1ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCA < 1:1638776/91‑1ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCA > 1:1658299/1‑91ATGATATTAGTAACGTGGAATGATATTCGACGAGATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCA < 1:3688820/91‑1 GATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAAC < 1:2483528/91‑1 TATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGA < 1:1653400/91‑1 ATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGAT < 1:1116225/91‑1 ATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGAT < 1:1254668/91‑1 TTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACG < 1:3632062/91‑1 TATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGC < 1:2038583/91‑1 TAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCAT < 1:694724/91‑1 TAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTG < 1:1617493/91‑1 AGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTAT < 1:1248461/91‑1 AGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTAT < 1:668139/91‑1 GGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATA < 1:1083144/91‑1 GGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATA < 1:2878913/91‑1 GGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATA < 1:1083157/91‑1 CGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAta < 1:3787548/91‑3 CGATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAAT > 1:2549881/1‑91 ATGACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAATTA > 1:1274237/1‑91 GACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAATTATA < 1:1215981/91‑1 ATGATATTAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1281411‑1281507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgatgACTTTGTGCTTCTGCTTCTGATGGCACGTCACGCATCGTTGGTATAAAAACTTTGGATTGCTTCATAATTATTTATCCTCCTAAATTATA < USA300TCH1516_ALE/1281540‑1281451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |