| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1281507 | 60 (0.610) | 9 (0.100) | 6/146 | NT | 12.4% | coding (33/1704 nt) | proS | Proline‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1281540 | 72 (0.800) | coding (66/1704 nt) | proS | Proline‑‑tRNA ligase | |||||
TAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGT > USA300TCH1516_ALE/1281418‑1281597 | tAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGc < 1:3282577/91‑1 (MQ=255)tAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGc > 1:707784/1‑91 (MQ=255) aGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCg > 1:593402/1‑91 (MQ=255) tAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTg < 1:2519726/91‑1 (MQ=255) aaCGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGa > 1:1135605/1‑91 (MQ=255) aaCGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGa > 1:59886/1‑91 (MQ=255) aaCATGGAATGATAGTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGa < 1:3739404/91‑1 (MQ=255) gAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGcc < 1:3397198/91‑1 (MQ=255) gAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGcc < 1:1163019/91‑1 (MQ=255) aTGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCAt < 1:1296157/91‑1 (MQ=255) gATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATca > 1:2038427/1‑91 (MQ=255) tatTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATcaga < 1:2963760/91‑1 (MQ=255) tatTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATcaga > 1:451859/1‑91 (MQ=255) atTCGACGATATTTCTTATAATTTAGGAGGATAGATACTTATGAAGCAATCCAAAGTTTATATACCAACGATGCGTGACGTGCCATcagaa > 1:3315123/1‑91 (MQ=255) ttCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATcagaag < 1:2804993/91‑1 (MQ=255) cgacgaTATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATcagaagca < 1:4065977/91‑1 (MQ=255) gacgaTATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATcagaagcag < 1:1746458/91‑1 (MQ=255) tatTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAgaagcagaagca > 1:3250488/1‑91 (MQ=255) tatTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAgaagcagaagca > 1:2193424/1‑91 (MQ=255) tttCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGcaca > 1:710105/1‑91 (MQ=255) ttCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACaa < 1:1263527/91‑1 (MQ=255) tCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACaaa < 1:2476822/91‑1 (MQ=255) ttATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacg < 1:3632062‑M1/91‑34 (MQ=255) tataATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgc < 1:2038583‑M1/91‑35 (MQ=255) tataATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTc < 1:1215981‑M2/91‑2 (MQ=255) taATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcat < 1:694724‑M1/91‑37 (MQ=255) taATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcat > 1:1274237‑M2/1‑88 (MQ=255) tattagGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcg < 1:3787548‑M2/89‑6 (MQ=255) aTTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcg > 1:2549881‑M2/1‑86 (MQ=255) tAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttg < 1:1617493‑M1/91‑42 (MQ=255) tAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGttt < 1:706591/91‑1 (MQ=255) aggaggATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTtta > 1:3458700/1‑91 (MQ=255) aggaggATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTtta > 1:988583/1‑91 (MQ=255) ggaggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTttat > 1:85195/1‑91 (MQ=255) gaggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTttatt > 1:1509944/1‑91 (MQ=255) aggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtat < 1:668139‑M1/91‑46 (MQ=255) aggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtat < 1:1248461‑M1/91‑46 (MQ=255) ggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtata < 1:1083144‑M1/91‑47 (MQ=255) ggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtata < 1:2878913‑M1/91‑47 (MQ=255) ggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtata < 1:1083157‑M1/91‑47 (MQ=255) ggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTtattat < 1:2178410/91‑1 (MQ=255) gaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTattatt < 1:3786591/91‑1 (MQ=255) ataaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTg < 1:1654954/91‑1 (MQ=255) ataaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTg > 1:3243178/1‑91 (MQ=255) aaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGaa > 1:723652/1‑91 (MQ=255) aataatTATGAAGCAATCCAACGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGaaa > 1:2247947/1‑91 (MQ=255) ataatTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAAt > 1:810757/1‑91 (MQ=255) atTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCgg < 1:1407101/91‑1 (MQ=255) atTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCgg < 1:1404643/91‑1 (MQ=255) ttATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCggg > 1:2973350/1‑91 (MQ=255) tATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGt < 1:2552777/91‑1 (MQ=255) tGAAGCAGTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGATATCGGGttt < 1:2083272/91‑1 (MQ=255) tGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGttt < 1:2872867/91‑1 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTGTTATTGAAATCGGGttacc < 1:1776155/91‑4 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGttacc < 1:1775778/91‑4 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGa < 1:446599/91‑1 (MQ=255) aGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGAt < 1:2751746/91‑1 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa > 1:2360751/1‑91 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa < 1:773380/91‑1 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa < 1:1397931/91‑1 (MQ=255) tCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAAc < 1:2861126/91‑1 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa < 1:1934989/91‑1 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa > 1:3140456/1‑91 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa < 1:2094687/91‑1 (MQ=255) aaaGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACaaa < 1:3059220/91‑1 (MQ=255) aaaGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACaaa > 1:722416/1‑91 (MQ=255) aaGTTTTTATACGAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAg > 1:3186034/1‑91 (MQ=255) gTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTa > 1:2436883/1‑91 (MQ=255) ttATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAg < 1:1940433/91‑1 (MQ=255) ttATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAg > 1:1429077/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:1083144‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:2878913‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:1083157‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415199/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415214/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415315/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt < 1:482808/91‑1 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcct < 1:1248461‑M2/91‑47 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcct < 1:668139‑M2/91‑47 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGTAATCGGGTTTGATAANANAAANTACAAGTg > 1:388301/1‑91 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg > 1:1867662/1‑91 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg < 1:1032106/91‑1 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg > 1:388273/1‑91 (MQ=255) ccAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGa > 1:340978/1‑91 (MQ=255) cAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctccta < 1:1617493‑M2/91‑51 (MQ=255) aCGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGAttt < 1:1462111/91‑1 (MQ=255) cGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtataaaaactttggattgcttcataattatttatcctcctaata < 1:3787548‑M1/91‑87 (MQ=255) cGATGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaat > 1:2549881‑M1/1‑5 (MQ=255) cGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTta < 1:3050890/91‑1 (MQ=255) aTGactttgtgcttctgcttctgatggcacgtcacgcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaatta > 1:1274237‑M1/1‑3 (MQ=255) aTGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaatta < 1:694724‑M2/91‑56 (MQ=255) tGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAg < 1:494413/91‑1 (MQ=255) tGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAg > 1:671247/1‑91 (MQ=255) gactttgtgcttctgcttctgatggcacgtcacgcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaattata < 1:1215981‑M1/91‑91 (MQ=255) gCGTTACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt < 1:3454174/91‑1 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaattata < 1:2038583‑M2/91‑58 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt > 1:150277/1‑91 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt < 1:3808348/91‑1 (MQ=255) | TAGTAACGTGGAATGATATTCGACGATATTTCTTATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGT > USA300TCH1516_ALE/1281418‑1281597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |