| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1281507 | 60 (0.610) | 9 (0.100) | 6/146 | NT | 12.4% | coding (33/1704 nt) | proS | Proline‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1281540 | 72 (0.800) | coding (66/1704 nt) | proS | Proline‑‑tRNA ligase | |||||
TATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTAAATA > USA300TCH1516_ALE/1281451‑1281628 | tataATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTc < 1:1215981‑M2/91‑2 (MQ=255) taATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcat > 1:1274237‑M2/1‑88 (MQ=255) tattagGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcg < 1:3787548‑M2/89‑6 (MQ=255) aTTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcg > 1:2549881‑M2/1‑86 (MQ=255) tAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGttt < 1:706591/91‑1 (MQ=255) aggaggATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTtta > 1:988583/1‑91 (MQ=255) aggaggATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTtta > 1:3458700/1‑91 (MQ=255) ggaggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTttat > 1:85195/1‑91 (MQ=255) gaggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTttatt > 1:1509944/1‑91 (MQ=255) ggaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTtattat < 1:2178410/91‑1 (MQ=255) gaTAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTattatt < 1:3786591/91‑1 (MQ=255) ataaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTg < 1:1654954/91‑1 (MQ=255) ataaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTg > 1:3243178/1‑91 (MQ=255) aaataaTTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGaa > 1:723652/1‑91 (MQ=255) aataatTATGAAGCAATCCAACGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGaaa > 1:2247947/1‑91 (MQ=255) ataatTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAAt > 1:810757/1‑91 (MQ=255) atTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCgg < 1:1404643/91‑1 (MQ=255) atTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCgg < 1:1407101/91‑1 (MQ=255) ttATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCggg > 1:2973350/1‑91 (MQ=255) tATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGt < 1:2552777/91‑1 (MQ=255) tGAAGCAGTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGATATCGGGttt < 1:2083272/91‑1 (MQ=255) tGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGttt < 1:2872867/91‑1 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTGTTATTGAAATCGGGttacc < 1:1776155/91‑4 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGttacc < 1:1775778/91‑4 (MQ=255) aaGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGa < 1:446599/91‑1 (MQ=255) aGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGAt < 1:2751746/91‑1 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa < 1:773380/91‑1 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa > 1:2360751/1‑91 (MQ=255) aaTCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATaaa < 1:1397931/91‑1 (MQ=255) tCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAAc < 1:2861126/91‑1 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa < 1:1934989/91‑1 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa < 1:2094687/91‑1 (MQ=255) ccAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACa > 1:3140456/1‑91 (MQ=255) aaaGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACaaa < 1:3059220/91‑1 (MQ=255) aaaGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACaaa > 1:722416/1‑91 (MQ=255) aaGTTTTTATACGAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAg > 1:3186034/1‑91 (MQ=255) gTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTa > 1:2436883/1‑91 (MQ=255) ttATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAg < 1:1940433/91‑1 (MQ=255) ttATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAg > 1:1429077/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:2878913‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:1083157‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcc < 1:1083144‑M2/91‑46 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt < 1:482808/91‑1 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415315/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415214/1‑91 (MQ=255) tataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGt > 1:415199/1‑91 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcct < 1:668139‑M2/91‑47 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcct < 1:1248461‑M2/91‑47 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGTAATCGGGTTTGATAANANAAANTACAAGTg > 1:388301/1‑91 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg < 1:1032106/91‑1 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg > 1:388273/1‑91 (MQ=255) ataCCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTg > 1:1867662/1‑91 (MQ=255) ccAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGa > 1:340978/1‑91 (MQ=255) cAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctccta < 1:1617493‑M2/91‑51 (MQ=255) aCGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGAttt < 1:1462111/91‑1 (MQ=255) cGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTta < 1:3050890/91‑1 (MQ=255) aTGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaatta < 1:694724‑M2/91‑56 (MQ=255) tGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAg < 1:494413/91‑1 (MQ=255) tGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAg > 1:671247/1‑91 (MQ=255) gCGTTACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt < 1:3454174/91‑1 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaattata < 1:2038583‑M2/91‑58 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt > 1:150277/1‑91 (MQ=255) gCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGt < 1:3808348/91‑1 (MQ=255) cGTGACGTGCCATCAGAAGCAGAAGCACAAAGTcatcgttggtataaaaactttggattgcttcataattatttatcctcctaaattataa < 1:3632062‑M2/91‑59 (MQ=255) gTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTa > 1:877901/1‑91 (MQ=255) gTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTa > 1:112567/1‑91 (MQ=255) gTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTa > 1:877783/1‑91 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt > 1:3223860/1‑91 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt < 1:1068069/91‑1 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt > 1:1555607/1‑91 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt > 1:3224371/1‑91 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt > 1:3224372/1‑91 (MQ=255) gACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAtt < 1:3474170/91‑1 (MQ=255) aCGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTAttt > 1:3504937/1‑91 (MQ=255) cATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCt < 1:3760474/91‑1 (MQ=255) aTCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTa > 1:810883/1‑91 (MQ=255) agaagcagaagcACAAAGTCATCGTTTATTATCGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCa < 1:3527033/91‑1 (MQ=255) agcagaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAaca > 1:2443189/1‑91 (MQ=255) agcagaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAaca < 1:3520765/91‑1 (MQ=255) gcagaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAacac > 1:641054/1‑91 (MQ=255) gcagaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAacac < 1:1662466/91‑1 (MQ=255) gcagaagcaCAAAGTCATCGCTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAacac > 1:615605/1‑91 (MQ=255) cagaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAacaca < 1:2338106/91‑2 (MQ=255) gaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtg > 1:3272119/1‑91 (MQ=255) gaagcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtg > 1:774735/1‑91 (MQ=255) agcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtgtg > 1:3260975/1‑91 (MQ=255) agcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtgtg < 1:362132/91‑1 (MQ=255) gcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtgtgt < 1:3417932/91‑1 (MQ=255) gcaCAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACgtgtgt > 1:2008145/1‑91 (MQ=255) caAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTaa > 1:2623036/1‑91 (MQ=255) aaaGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTaaa < 1:4111390/91‑1 (MQ=255) aaGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTAaat > 1:1376138/1‑91 (MQ=255) aGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTAaata > 1:3667521/1‑91 (MQ=255) aGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTAaata > 1:3667569/1‑91 (MQ=255) | TATAATTTAGGAGGATAAATAATTATGAAGCAATCCAAAGTTTTTATACCAACGATGCGTGACGTGCCATCAGAAGCAGAAGCACAAAGTCATCGTTTATTATTGAAATCGGGTTTGATAAAACAAAGTACAAGTGGGATTTATAGTTATTTACCGCTAGCAACACGTGTGTTAAATA > USA300TCH1516_ALE/1281451‑1281628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |