| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1283202 | 96 (0.980) | 7 (0.080) | 5/146 | NT | 7.3% | intergenic (+24/‑234) | proS/polC_1 | Proline‑‑tRNA ligase/DNA polymerase III PolC‑type |
| ? | USA300TCH1516_ALE | = 1283240 | 89 (0.990) | intergenic (+62/‑196) | proS/polC_1 | Proline‑‑tRNA ligase/DNA polymerase III PolC‑type | |||||
GGTGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1283107‑1283202‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagagCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTGTA < USA300TCH1516_ALE/1283240‑1283151 GGTGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTAT > 1:851517/1‑91 GTGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATA > 1:502429/1‑91 TGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAA < 1:325748/91‑1 TGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAA > 1:249677/1‑91 TAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG > 1:460085/1‑91 TAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG > 1:2813496/1‑91 TGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGA‑AAAAGCATCAGATTTCTTTCAGCTTTTT < 1:997462/91‑1 TACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTAC < 1:1219470/91‑1 ACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACT < 1:646299/91‑1 AATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTT < 1:3067064/91‑1 AATATGATAACTTAAAATGATTAAGATCGGATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAA < 1:2358684/91‑1 AATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAA < 1:3047869/91‑1 AATATGATAACGTAAAATCATTAAGATCGAATGAATTATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCGTATAA < 1:2358683/91‑1 ATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTA > 1:1414677/1‑91 ATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTA > 1:622791/1‑91 ATAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTA > 1:622867/1‑91 TAAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTAT < 1:1515841/91‑1 AAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATT > 1:3983457/1‑91 AAGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATT > 1:436229/1‑91 AGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTT < 1:2440503/91‑1 AGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTT < 1:2440339/91‑1 AGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTT < 1:2677486/91‑1 AGAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTT < 1:1443397/91‑1 GAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTG < 1:1045379/91‑1 GAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTG < 1:1462110/91‑1 GAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTG < 1:424690/91‑1 GAGCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTG > 1:2635555/1‑91 GCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTGTA < 1:679919/91‑1 GGTGATAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1283107‑1283202‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataagagCAGGACATAAGCATCAGATTTCTTTCAGCTTTTTCCTACTCTTATAATTCATTCGATCTTAATTATTTTAAGTTATCATATTTATTTGTA < USA300TCH1516_ALE/1283240‑1283151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |