BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1283202	96 (0.980)	7 (0.080)	5/146	NT	7.3%	intergenic (+24/‑234)	proS/polC_1	Proline‑‑tRNA ligase/DNA polymerase III PolC‑type
*	?	USA300TCH1516_ALE	= 1283240	89 (0.990)	7 (0.080)	5/146	NT	7.3%	intergenic (+62/‑196)	proS/polC_1	Proline‑‑tRNA ligase/DNA polymerase III PolC‑type

Only 100 of 130 total aligned reads displayed.

TACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATG  >  USA300TCH1516_ALE/1283151‑1283330

tACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGc                                                                                            <  1:679919‑M2/91‑2 (MQ=255)

  cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc                                                                                          <  1:1045379‑M2/91‑4 (MQ=255)

  cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc                                                                                          >  1:2635555‑M2/1‑88 (MQ=255)

  cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc                                                                                          <  1:1462110‑M2/91‑4 (MQ=255)

  cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc                                                                                          <  1:424690‑M2/91‑4 (MQ=255)

   aaataaatATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctct                                                                                         <  1:2677486‑M2/91‑5 (MQ=255)

   aaataaatATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctct                                                                                         <  1:2440339‑M2/91‑5 (MQ=255)

   aaataaatATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctct                                                                                         <  1:1443397‑M2/91‑5 (MQ=255)

    aataaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctctt                                                                                        >  1:436229‑M2/1‑86 (MQ=255)

     ataaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctctta                                                                                       <  1:1515841‑M2/91‑7 (MQ=255)

      taaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttat                                                                                      >  1:622791‑M2/1‑84 (MQ=255)

      taaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttat                                                                                      >  1:622867‑M2/1‑84 (MQ=255)

       aaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatt                                                                                     >  1:341293/1‑91 (MQ=255)

       aaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatt                                                                                     >  1:3155469/1‑91 (MQ=255)

       aaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatt                                                                                     >  1:2427298/1‑91 (MQ=255)

        aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta                                                                                    >  1:1923684/1‑91 (MQ=255)

        aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta                                                                                    >  1:1522613/1‑91 (MQ=255)

        aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta                                                                                    >  1:1924720/1‑91 (MQ=255)

        aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTACGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta                                                                                    >  1:3287657/1‑91 (MQ=255)

          tatGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTatta‑tt                                                                                 >  1:681375/1‑91 (MQ=255)

           atGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑ttt                                                                                <  1:2126786/91‑1 (MQ=255)

            tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑tttt                                                                               >  1:1744558/1‑91 (MQ=255)

            tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑tttt                                                                               >  1:2620659/1‑91 (MQ=255)

            tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑tttt                                                                               >  1:1957667/1‑91 (MQ=255)

            tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑tttt                                                                               >  1:1957561/1‑91 (MQ=255)

               tAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGa                                                                            <  1:2426361/91‑1 (MQ=255)

                aaCTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGat                                                                           >  1:108688/1‑91 (MQ=255)

                aaCTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGat                                                                           >  1:201652/1‑91 (MQ=255)

                   ttAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGAtata                                                                        >  1:2631318/1‑91 (MQ=255)

                     aaaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAAt                                                                      <  1:227257/91‑1 (MQ=255)

                      aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATg                                                                     >  1:4131293/1‑91 (MQ=255)

                      aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATg                                                                     <  1:100661/91‑1 (MQ=255)

                      aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATg                                                                     >  1:1278333/1‑91 (MQ=255)

                      aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATg                                                                     <  1:1084078/91‑1 (MQ=255)

                         taatTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGatt                                                                  >  1:1967163/1‑91 (MQ=255)

                              aaGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCg                                                             >  1:2919284/1‑91 (MQ=255)

                               aGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGa                                                            <  1:91942/91‑1 (MQ=255)

                                gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGAt                                                           <  1:2896992/91‑1 (MQ=255)

                                gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGAt                                                           <  1:120913/91‑1 (MQ=255)

                                gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGAt                                                           <  1:232025/91‑1 (MQ=255)

                                gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGAt                                                           >  1:3697015/1‑91 (MQ=255)

                                gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGAt                                                           <  1:121029/91‑1 (MQ=255)

                                 aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATg                                                          <  1:165438/91‑1 (MQ=255)

                                 aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATg                                                          >  1:1125302/1‑91 (MQ=255)

                                 aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATg                                                          >  1:1424650/1‑91 (MQ=255)

                                  tCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGa                                                         <  1:3087896/91‑1 (MQ=255)

                                   cGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCCGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGaa                                                        <  1:2418325/91‑1 (MQ=255)

                                    gaatgaatTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGaaa                                                       <  1:2088088/91‑1 (MQ=255)

                                     aatgaatTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGaaaa                                                      >  1:2591161/1‑91 (MQ=255)

                                          atTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGAc                                                 >  1:3477689/1‑91 (MQ=255)

                                          atTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGAc                                                 >  1:2809504/1‑91 (MQ=255)

                                           ttATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcatccgatcttaatcattttaagttatcatatt                                                 <  1:2358684‑M2/91‑45 (MQ=255)

                                           ttATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACt                                                <  1:2384763/91‑1 (MQ=255)

                                             ataAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGa                                              >  1:1716847/1‑91 (MQ=255)

                                              taAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGaa                                             >  1:1819468/1‑91 (MQ=255)

                                               aaGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaattattttaagttatcatatttatt                                             <  1:3067064‑M2/91‑49 (MQ=255)

                                               aaGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAg                                            <  1:3326540/91‑1 (MQ=255)

                                               aaGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAg                                            >  1:2312427/1‑91 (MQ=255)

                                                agagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGa                                           >  1:944671/1‑91 (MQ=255)

                                                agagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGa                                           <  1:2331461/91‑1 (MQ=255)

                                                 gagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGAc                                          <  1:730055/91‑1 (MQ=255)

                                                   gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaattattttaagttatcatatttatttgta                                         <  1:1219470‑M2/91‑53 (MQ=255)

                                                   gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAt                                        >  1:650865/1‑91 (MQ=255)

                                                   gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAt                                        >  1:637440/1‑91 (MQ=255)

                                                     aGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAg                                      <  1:3792780/91‑1 (MQ=255)

                                                     aGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAg                                      <  1:4019696/91‑1 (MQ=255)

                                                     aGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAg                                      <  1:3792566/91‑1 (MQ=255)

                                                       gAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGta                                    >  1:251794/1‑91 (MQ=255)

                                                        aaaaaGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGtat                                   >  1:1502445/1‑91 (MQ=255)

                                                          aaaGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTCTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATaa                                 >  1:4055156/1‑91 (MQ=255)

                                                           aaGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAAt                                >  1:4080842/1‑91 (MQ=255)

                                                             gCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTa                              >  1:1715093/1‑91 (MQ=255)

                                                               tGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTaaa                            >  1:793084/1‑91 (MQ=255)

                                                                gaaagaaaTCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAg                           <  1:829118/91‑1 (MQ=255)

                                                                gaaagaaaTCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAg                           >  1:1123432/1‑91 (MQ=255)

                                                                     aaaTCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATaaa                      >  1:1856009/1‑91 (MQ=255)

                                                                      aaTCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAAt                     <  1:176076/91‑1 (MQ=255)

                                                                        tCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAAttt                   >  1:3097501/1‑91 (MQ=255)

                                                                        tCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAAttt                   >  1:370825/1‑91 (MQ=255)

                                                                        tCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAAttt                   <  1:768898/91‑1 (MQ=255)

                                                                         cTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTg                  >  1:2568445/1‑91 (MQ=255)

                                                                          tGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGt                 >  1:3982307/1‑91 (MQ=255)

                                                                          tGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGt                 >  1:4084571/1‑91 (MQ=255)

                                                                          tGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGt                 >  1:1337995/1‑91 (MQ=255)

                                                                          tGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGt                 >  1:1337915/1‑91 (MQ=255)

                                                                              gCTTATGTCCTGCTCTTATTATTTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGtttt              >  1:2291622/1‑91 (MQ=255)

                                                                              gCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTa             >  1:4034966/1‑91 (MQ=255)

                                                                              gCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTa             >  1:2868886/1‑91 (MQ=255)

                                                                              gCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTa             <  1:1289467/91‑1 (MQ=255)

                                                                                 tATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACa          >  1:2285343/1‑91 (MQ=255)

                                                                                  aTGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACaa         <  1:789222/91‑1 (MQ=255)

                                                                                    gTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAata       <  1:3991400/91‑1 (MQ=255)

                                                                                     tCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAatat      >  1:2349904/1‑91 (MQ=255)

                                                                                       cTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATaa    <  1:517058/91‑1 (MQ=255)

                                                                                       cTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATaa    <  1:1689507/91‑1 (MQ=255)

                                                                                        tGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAAt   <  1:2479689/91‑1 (MQ=255)

                                                                                         gCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATg  >  1:3019628/1‑91 (MQ=255)

                                                                                         gCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATg  >  1:26699/1‑91 (MQ=255)

                                                                                         gCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATg  >  1:2114524/1‑91 (MQ=255)

                                                                                         gCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATg  <  1:103972/91‑1 (MQ=255)

TACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTA‑TTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACATAGTATAATTAAAGATAAATTTGTTTTAACAATATAATG  >  USA300TCH1516_ALE/1283151‑1283330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.