| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1283202 | 96 (0.980) | 7 (0.080) | 5/146 | NT | 7.3% | intergenic (+24/‑234) | proS/polC_1 | Proline‑‑tRNA ligase/DNA polymerase III PolC‑type |
| ? | USA300TCH1516_ALE | = 1283240 | 89 (0.990) | intergenic (+62/‑196) | proS/polC_1 | Proline‑‑tRNA ligase/DNA polymerase III PolC‑type | |||||
Only 100 of 158 total aligned reads displayed.
TAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAT > USA300TCH1516_ALE/1283112‑1283292 | tAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG > 1:2813496‑M1/1‑91 (MQ=255)tAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAG > 1:460085‑M1/1‑91 (MQ=255) aGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGt > 1:2090317/1‑91 (MQ=255) aGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGt > 1:2090610/1‑91 (MQ=255) cGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAg > 1:1363577/1‑91 (MQ=255) cGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAg > 1:1363463/1‑91 (MQ=255) gaagaaGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAgg < 1:70952/91‑1 (MQ=255) aagaagTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGa > 1:3744893/1‑91 (MQ=255) aagaagTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGa > 1:3729394/1‑91 (MQ=255) agaagTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGaa > 1:2381330/1‑91 (MQ=255) agaagTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGaa > 1:2151779/1‑91 (MQ=255) agTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGaaaaa > 1:158642/1‑91 (MQ=255) gTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAg > 1:586448/1‑91 (MQ=255) ttCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGc > 1:134368/1‑91 (MQ=255) ttCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGc > 1:134167/1‑91 (MQ=255) tCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAGTGAATTATAAGAGTAGGAAAAAGCt > 1:3866000/1‑91 (MQ=255) tCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCt < 1:173914/91‑1 (MQ=255) cacaTTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTg > 1:3349297/1‑91 (MQ=255) acaTTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTga > 1:2511706/1‑91 (MQ=255) tgaCTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAAt < 1:3510935/91‑1 (MQ=255) tgaCTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAAt > 1:2524843/1‑91 (MQ=255) tAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGAt < 1:3375720/91‑1 (MQ=255) aaTGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATg > 1:881125/1‑91 (MQ=255) tGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCt > 1:2714855/1‑91 (MQ=255) tGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCt < 1:2059215/91‑1 (MQ=255) tGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCt > 1:2886655/1‑91 (MQ=255) gACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCtt < 1:1050574/91‑1 (MQ=255) aCTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTa > 1:791286/1‑91 (MQ=255) aCTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTa < 1:2768189/91‑1 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt < 1:1962845/91‑1 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt < 1:793133/91‑1 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt > 1:2209714/1‑91 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt > 1:2206004/1‑91 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt < 1:2053275/91‑1 (MQ=255) cTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTAt > 1:851731/1‑91 (MQ=255) gTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGt > 1:189189/1‑91 (MQ=255) gTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGt > 1:1666580/1‑91 (MQ=255) cATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTcc > 1:1808664/1‑91 (MQ=255) tACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGcaggacataagcatcagatttctttcagctttttcctac < 1:1219470‑M1/91‑40 (MQ=255) aCAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGcaggacataagcatcagatttctttcagctttttcctact < 1:646299‑M1/91‑41 (MQ=255) cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc < 1:1462110‑M2/91‑4 (MQ=255) cAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctc < 1:424690‑M2/91‑4 (MQ=255) aaataaatATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctct < 1:2440339‑M2/91‑5 (MQ=255) aataaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctctt > 1:436229‑M2/1‑86 (MQ=255) taaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttat > 1:1414677‑M2/1‑84 (MQ=255) aaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatt > 1:3155469/1‑91 (MQ=255) aaataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatt > 1:2427298/1‑91 (MQ=255) aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGcaggacataagcatcagatttctttcagctttttcctactcttataa < 1:3047869‑M1/91‑48 (MQ=255) aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta > 1:1522613/1‑91 (MQ=255) aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta > 1:1924720/1‑91 (MQ=255) aataTGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTACGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCttatta > 1:3287657/1‑91 (MQ=255) atatGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTtattat > 1:2424614/1‑91 (MQ=255) tatGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTattatt > 1:681375/1‑91 (MQ=255) tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTAtttt > 1:2620659/1‑91 (MQ=255) tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTAtttt > 1:1957531/1‑91 (MQ=255) tGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTAtttt > 1:1957667/1‑91 (MQ=255) gATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTAttttt > 1:750877/1‑91 (MQ=255) aaCTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGat > 1:108688/1‑91 (MQ=255) aaCTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCGGAAAGAAATCTGATGCTTATGTCCTGCTCGTATTATTTTTGat > 1:4146810/1‑91 (MQ=255) aaaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAAt < 1:227257/91‑1 (MQ=255) aaaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAAt < 1:226618/91‑1 (MQ=255) aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATg > 1:4131293/1‑91 (MQ=255) aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATg < 1:100661/91‑1 (MQ=255) aaaTAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATg < 1:1084078/91‑1 (MQ=255) taatTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGatt > 1:1967163/1‑91 (MQ=255) aaGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCg > 1:2919284/1‑91 (MQ=255) gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGAt < 1:2896992/91‑1 (MQ=255) gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGAt < 1:120913/91‑1 (MQ=255) gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGAt < 1:232025/91‑1 (MQ=255) gATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGAt > 1:3697015/1‑91 (MQ=255) aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATg > 1:1125302/1‑91 (MQ=255) aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATg > 1:1424650/1‑91 (MQ=255) aTCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATg < 1:165438/91‑1 (MQ=255) cGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCCGCTCTTATTATTTTTGATATAATGATTATTCGATGaa < 1:2418325/91‑1 (MQ=255) aatgaatTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGaaaa < 1:1727434/91‑1 (MQ=255) aatTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGa > 1:2659683/1‑91 (MQ=255) atTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGAc > 1:3477689/1‑91 (MQ=255) ttATACGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaatgattttacgttatcatatt < 1:2358683‑M2/91‑45 (MQ=255) ttATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaattattttaagttatcatatt < 1:3047869‑M2/91‑45 (MQ=255) ttATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcatccgatcttaatcattttaagttatcatatt < 1:2358684‑M2/91‑45 (MQ=255) ataAGAGcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatattta > 1:622791‑M1/1‑7 (MQ=255) ataAGAGcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatattta > 1:622867‑M1/1‑7 (MQ=255) taAGAGcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttat < 1:1515841‑M1/91‑86 (MQ=255) taAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGaa > 1:1819468/1‑91 (MQ=255) taAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGaa > 1:2860808/1‑91 (MQ=255) aaGAGcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttatt > 1:3983457‑M1/1‑5 (MQ=255) aaGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaattattttaagttatcatatttatt < 1:3067064‑M2/91‑49 (MQ=255) agagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttattt < 1:2440503‑M1/91‑88 (MQ=255) agagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttattt < 1:1443397‑M1/91‑88 (MQ=255) agagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttattt < 1:2677486‑M1/91‑88 (MQ=255) agagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGa > 1:944671/1‑91 (MQ=255) agagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGa < 1:2331461/91‑1 (MQ=255) gagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttatttg > 1:2635555‑M1/1‑3 (MQ=255) gagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttatttg < 1:1462110‑M1/91‑89 (MQ=255) gagcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttatttg < 1:1045379‑M1/91‑89 (MQ=255) gagTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGAc < 1:2602609/91‑1 (MQ=255) gcaggacataagcatcagatttctttcagctttttcctactcttataattcattcgatcttaattattttaagttatcatatttatttgta < 1:679919‑M1/91‑91 (MQ=255) gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGctcttataattcattcgatcttaattattttaagttatcatatttatttgta < 1:1219470‑M2/91‑53 (MQ=255) gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAt > 1:650865/1‑91 (MQ=255) gTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAt > 1:637440/1‑91 (MQ=255) | TAGCGAAGAAGTTCACATTGATGACTTAATGACTGTCATTACAAATAAATATGATAACTTAAAATAATTAAGATCGAATGAATTATAAGAGTAGGAAAAAGCTGAAAGAAATCTGATGCTTATGTCCTGCTCTTATTATTTTTGATATAATGATTATTCGATGAAAAATGACTGAAGACAT > USA300TCH1516_ALE/1283112‑1283292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |