| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1292484 = | 88 (0.890) | 9 (0.110) | 6/128 | NT | 12.0% | intergenic (+38/‑348) | infB/rbfA | Translation initiation factor IF‑2/Ribosome‑binding factor A |
| ? | USA300TCH1516_ALE | 1292539 = | 62 (0.790) | intergenic (+93/‑293) | infB/rbfA | Translation initiation factor IF‑2/Ribosome‑binding factor A | |||||
TAACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1292589‑1292484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGG > USA300TCH1516_ALE/1292539‑1292628 TAACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATAT > 1:4074669/1‑91 AACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATT > 1:1129085/1‑91 AACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATT < 1:361221/91‑1 ACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTT < 1:129531/91‑1 TTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATA > 1:2592251/1‑91 TTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAG < 1:3783604/91‑1 TAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGG > 1:3089096/1‑91 AATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGG > 1:586226/1‑91 AATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGG > 1:586688/1‑91 AATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGGATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAAGATTTATAGGG > 1:1060429/1‑91 ATAGGTACTCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGA < 1:2077046/91‑1 ATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGA > 1:2228420/1‑91 TAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATGTGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAG < 1:4137490/91‑1 TAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAG > 1:792940/1‑91 TAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAG < 1:3522497/91‑1 AGGTAATCTATTCTAATAAAAAACCAAATGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGC < 1:1225239/91‑1 AGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGC > 1:1770757/1‑91 GGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCA > 1:1780762/1‑91 GGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCA > 1:1780817/1‑91 GGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCA < 1:2752955/91‑1 GTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGATCAT > 1:3212824/1‑91 TAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATA < 1:1052389/91‑1 AATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATAT > 1:977718/1‑91 AATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATAT < 1:350839/91‑1 AATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATAT < 1:3660450/91‑1 AAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGA > 1:4092181/1‑91 CTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTA > 1:968244/1‑91 CTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAA > 1:1263278/1‑91 TATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAA > 1:3898788/1‑91 AAGTAGGCACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAATGTT > 1:3222285/1‑91 AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTT > 1:1813408/1‑91 AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTT > 1:429133/1‑91 ACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTA > 1:2237785/1‑91 ACACTTAAAAAGTGCAATATTTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTA > 1:2237753/1‑91 TTATAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATA < 1:643800/91‑1 TAGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAA < 1:2424294/91‑1 AGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAT > 1:3842196/1‑91 AGGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAAT < 1:78449/91‑1 GGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATT > 1:2837297/1‑91 GGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATT > 1:422067/1‑91 GGGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATT > 1:2353533/1‑91 GGAGTATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTT < 1:1249669/91‑1 GGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTT < 1:3058457/91‑1 GGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTT > 1:791308/1‑91 GGAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTT < 1:1836352/91‑1 GAGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTT > 1:346822/1‑91 AGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTG < 1:719406/91‑1 AGCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTG < 1:719582/91‑1 GCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGT < 1:3269614/91‑1 GCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGT < 1:374661/91‑1 GCATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGT > 1:2924270/1‑91 ATATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGG > 1:2118753/1‑91 TATTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGT < 1:2488918/91‑1 TTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGG > 1:2253620/1‑91 TAACTTTTAATAGGTAATCTATTCTAATAAAAAACCAAAAGCTAGTATCAAATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1292589‑1292484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatagggagcatatTTGATACTAGCTTTTGGTTTTTTATTAGAATAGATTACCTATTAAAAGTTACGTTATATGGACATGATTTTGTATAAAATTTTGTGGTGG > USA300TCH1516_ALE/1292539‑1292628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |