| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1298112 | 94 (0.960) | 14 (0.150) | 9/154 | NT | 13.6% | intergenic (+8/‑228) | pnp/rnj2 | Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2 |
| ? | USA300TCH1516_ALE | = 1298143 | 88 (0.930) | intergenic (+39/‑197) | pnp/rnj2 | Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2 | |||||
AATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1298020‑1298112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaATCACATGACGATACATTGTCGTCATATGACTTTAAATATTATTCTTCTAATGCTCTATGTGAAGCATTTACTCGACCTTGTTTATCAAT < USA300TCH1516_ALE/1298143‑1298054 AATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTA < 1:794186/91‑1AATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTA < 1:3937830/91‑1 ATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAA < 1:3250735/91‑1 ATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAA > 1:2926506/1‑91 TCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAA > 1:1890353/1‑91 AGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGATACATTGTC < 1:1179625/91‑1 GATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCG < 1:2492260/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:1715362/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:2260063/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:3931515/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:693092/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:693102/91‑1 ATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGT < 1:693512/91‑1 TTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGTC < 1:1641997/91‑1 CTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCACATGACGATACATTGTCGTCATA < 1:1443348/91‑1 AATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAATCACATGACGATACATTGTCGTCATATGAC < 1:3684687/91‑1 ATTGATAAACAAGGTCGAGTAGATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAATCACATGACGATACATTGTCGTCATATGACT < 1:2197684/91‑1 AGGTCGAGTGAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAATCACATGACGATACATTGTCGTCATATGACTTTAAATATTAT < 1:3978078/91‑1 GGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAATCACATGACGATACATTGTCGTCATATGACTTTAAATATTATT < 1:1012057/91‑1 AATCACATGACGATACATTGTCGTCATATGACTTTAAATATTATTCTTCTAATGCTCTATGTGAAGCATTTACTCGACCTTGTTTATCAAT < 1:4099352/91‑1 AATCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1298020‑1298112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaATCACATGACGATACATTGTCGTCATATGACTTTAAATATTATTCTTCTAATGCTCTATGTGAAGCATTTACTCGACCTTGTTTATCAAT < USA300TCH1516_ALE/1298143‑1298054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |