BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1298112	94 (0.960)	14 (0.150)	9/154	NT	13.6%	intergenic (+8/‑228)	pnp/rnj2	Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2
*	?	USA300TCH1516_ALE	= 1298143	88 (0.930)	14 (0.150)	9/154	NT	13.6%	intergenic (+39/‑197)	pnp/rnj2	Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2

Only 100 of 114 total aligned reads displayed.

AATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTGTTA  >  USA300TCH1516_ALE/1298053‑1298233

aaTTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGAt                                                                                            >  1:2815052/1‑91 (MQ=255)

 aTTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATt                                                                                           <  1:4099352‑M2/91‑2 (MQ=255)

      tAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGAttttttt                                                                                      >  1:1419716/1‑91 (MQ=255)

        aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                                                    >  1:3709725/1‑91 (MQ=255)

        aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                                                    >  1:3709799/1‑91 (MQ=255)

        aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                                                    <  1:3001933/91‑1 (MQ=255)

         aCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATg                                                                                   <  1:2313962/91‑1 (MQ=255)

         aCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATg                                                                                   <  1:1226648/91‑1 (MQ=255)

          cAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGc                                                                                  >  1:1094046/1‑91 (MQ=255)

           aaGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGcc                                                                                 <  1:4122716/91‑1 (MQ=255)

            aGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCa                                                                                <  1:2758954/91‑1 (MQ=255)

             ggTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCAc                                                                               >  1:736753/1‑91 (MQ=255)

             ggTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCAc                                                                               >  1:737118/1‑91 (MQ=255)

              gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                                                              >  1:2325716/1‑91 (MQ=255)

              gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                                                              >  1:2325604/1‑91 (MQ=255)

              gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                                                              <  1:850975/91‑1 (MQ=255)

               tCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACtt                                                                             <  1:610115/91‑1 (MQ=255)

               tCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACtt                                                                             <  1:610131/91‑1 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            >  1:351047/1‑91 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            <  1:2453822/91‑1 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            >  1:2377235/1‑91 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            <  1:3093195/91‑1 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            >  1:351102/1‑91 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            >  1:1311839/1‑91 (MQ=255)

                cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                                                            >  1:1311830/1‑91 (MQ=255)

                   gTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTa                                                                         >  1:183899/1‑91 (MQ=255)

                   gTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTa                                                                         <  1:2221110/91‑1 (MQ=255)

                   gTAAAGGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTa                                                                         <  1:1222008/91‑1 (MQ=255)

                       aTGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGGCATATGACGACAGTCTATCGTCTTGTGATTTTTTTATGCCGCTTTTTACgca                                                                     >  1:2898201/1‑89 (MQ=255)

                        tGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAg                                                                    >  1:3221941/1‑91 (MQ=255)

                        tGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAg                                                                    <  1:3092680/91‑1 (MQ=255)

                          cTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTg                                                                  <  1:599907/91‑1 (MQ=255)

                            tCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGAc                                                                <  1:1668830/91‑1 (MQ=255)

                             cacaTAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGAcc                                                               >  1:1137357/1‑91 (MQ=255)

                               caTAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCg                                                             >  1:2714944/1‑91 (MQ=255)

                                 tAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGtt                                                           <  1:3833332/91‑1 (MQ=255)

                                  agagCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGttt                                                          <  1:1420211/91‑1 (MQ=255)

                                   gagCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGtttt                                                         <  1:2253461/91‑1 (MQ=255)

                                     gCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGa                                                       >  1:2481969/1‑91 (MQ=255)

                                     gCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGa                                                       >  1:2481535/1‑91 (MQ=255)

                                      cATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGaa                                                      <  1:1979563/91‑1 (MQ=255)

                                        ttAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAAtt                                                    >  1:2831567/1‑91 (MQ=255)

                                         tAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAAttt                                                   >  1:1406506/1‑91 (MQ=255)

                                             agaaTAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATttgttg                                               >  1:4068886/1‑91 (MQ=255)

                                              gaaTAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTtgttgt                                              >  1:2459582/1‑91 (MQ=255)

                                               aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcatttactcgacc                                             <  1:1012057‑M2/91‑48 (MQ=255)

                                               aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTa                                             <  1:2915896/91‑1 (MQ=255)

                                               aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTa                                             <  1:2916137/91‑1 (MQ=255)

                                                ataataTTTAAAGTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcattcactcgacct                                            <  1:3978078‑M2/91‑49 (MQ=255)

                                                ataataTTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTAt                                            >  1:2672848/1‑91 (MQ=255)

                                                  aataTTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTg                                          >  1:71722/1‑91 (MQ=255)

                                                    tatTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGaa                                        <  1:2318055/91‑1 (MQ=255)

                                                    tatTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGaa                                        <  1:2317649/91‑1 (MQ=255)

                                                     atTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAAc                                       >  1:1366883/1‑91 (MQ=255)

                                                     atTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAAc                                       >  1:1890750/1‑91 (MQ=255)

                                                        tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt                                    >  1:3489866/1‑91 (MQ=255)

                                                        tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt                                    >  1:2375789/1‑91 (MQ=255)

                                                        tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt                                    <  1:1211912/91‑1 (MQ=255)

                                                          aaGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtttt                                  >  1:2119990/1‑91 (MQ=255)

                                                           aGTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcatctactcgaccttgtttatcaat                                 <  1:2197684‑M2/91‑60 (MQ=255)

                                                            gTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatt                                <  1:3684687‑M2/91‑61 (MQ=255)

                                                               atatGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAAc                             >  1:3998934/1‑91 (MQ=255)

                                                               atatGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAAc                             >  1:4853/1‑91 (MQ=255)

                                                               atatGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAAc                             >  1:1059956/1‑91 (MQ=255)

                                                                tatGACGACAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcag                            <  1:1443348‑M2/91‑65 (MQ=255)

                                                                  tGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCt                          <  1:1931725/91‑1 (MQ=255)

                                                                  tGACGACAATGTATCGTCATGTGA‑TTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCtt                         <  1:1415797/91‑1 (MQ=255)

                                                                   gacgacAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCtt                         <  1:144710/91‑1 (MQ=255)

                                                                   gacgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaa                         <  1:1641997‑M2/91‑68 (MQ=255)

                                                                    acgacAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCttt                        >  1:1440926/1‑91 (MQ=255)

                                                                    acgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaat                        <  1:693092‑M2/91‑69 (MQ=255)

                                                                    acgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaat                        <  1:693102‑M2/91‑69 (MQ=255)

                                                                    acgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaat                        <  1:693512‑M2/91‑69 (MQ=255)

                                                                    acgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaat                        <  1:1715362‑M2/91‑69 (MQ=255)

                                                                     cgacAATGTATCGTCATGTGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaatc                       <  1:2492260‑M2/91‑70 (MQ=255)

                                                                      gacAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTttat                      <  1:727109/91‑1 (MQ=255)

                                                                      gacAATGTATCGTCATATGACtttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaatttcagtaatct                      <  1:1179625‑M2/91‑71 (MQ=255)

                                                                       acAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTttatt                     <  1:1799552/91‑1 (MQ=255)

                                                                        cAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTttatta                    <  1:3428402/91‑1 (MQ=255)

                                                                           tGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTAttt                 <  1:424670/91‑1 (MQ=255)

                                                                           attgtCGTCATGTGATTTTTTTATGCCACTTTTCACGAAGTGACCCCTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTAttt                 >  1:3305862/5‑91 (MQ=255)

                                                                             tATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtg               >  1:3696471/1‑91 (MQ=255)

                                                                             tATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtg               >  1:3695674/1‑91 (MQ=255)

                                                                             tATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtg               >  1:4088460/1‑91 (MQ=255)

                                                                               tCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtg             <  1:88193/91‑1 (MQ=255)

                                                                               tCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtg             <  1:88261/91‑1 (MQ=255)

                                                                               tCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtg             >  1:2018484/1‑91 (MQ=255)

                                                                                cGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtgt            <  1:2145009/91‑1 (MQ=255)

                                                                                cGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtgt            <  1:2144859/91‑1 (MQ=255)

                                                                                cGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTtgtgt            <  1:2144858/91‑1 (MQ=255)

                                                                                 gTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATATTAAAACGCTTTATTATTTtgtgtg           >  1:3874311/1‑91 (MQ=255)

                                                                                  tCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGc          <  1:1579702/91‑1 (MQ=255)

                                                                                    aTGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCaa        >  1:239902/1‑91 (MQ=255)

                                                                                    aTGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCaa        >  1:1862383/1‑91 (MQ=255)

                                                                                     tgtgATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAAc       >  1:2866019/1‑91 (MQ=255)

                                                                                       tgATTTTTTTATGCCACTTTTTACGAAGTGACTCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTGTTTTGTGTGCAACTg     <  1:3540864/91‑1 (MQ=255)

                                                                                       tgATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTg     <  1:2701924/91‑1 (MQ=255)

                                                                                        gATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTGt    >  1:3430559/1‑91 (MQ=255)

                                                                                          tttttttATGCCCCTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTGTTa  >  1:3175588/1‑91 (MQ=255)

                                                                                          tttttttATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTGTTa  >  1:3354095/1‑91 (MQ=255)

AATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTAAAACGCTTTATTATTTTGTGTGCAACTGTTA  >  USA300TCH1516_ALE/1298053‑1298233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.