BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1298112	94 (0.960)	14 (0.150)	9/154	NT	13.6%	intergenic (+8/‑228)	pnp/rnj2	Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2
*	?	USA300TCH1516_ALE	= 1298143	88 (0.930)	14 (0.150)	9/154	NT	13.6%	intergenic (+39/‑197)	pnp/rnj2	Polyribonucleotide nucleotidyltransferase/Ribonuclease J 2

Only 100 of 125 total aligned reads displayed.

TCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTA  >  USA300TCH1516_ALE/1298022‑1298202

tCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAA                                                                                            >  1:1890353‑M1/1‑91 (MQ=255)

 cGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAg                                                                                           <  1:3713430/91‑1 (MQ=255)

  ggTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGt                                                                                          >  1:486860/1‑91 (MQ=255)

   gTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTc                                                                                         >  1:909616/1‑91 (MQ=255)

     gACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCat                                                                                       >  1:2825146/1‑91 (MQ=255)

     gACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCat                                                                                       >  1:176075/1‑91 (MQ=255)

       cacaCTTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCatat                                                                                     <  1:3457174/91‑1 (MQ=255)

         caATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATga                                                                                   <  1:2962813/91‑1 (MQ=255)

         caATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATga                                                                                   <  1:2963460/91‑1 (MQ=255)

           aTTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATgacg                                                                                 >  1:275027/1‑91 (MQ=255)

           aTTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATgacg                                                                                 >  1:1421644/1‑91 (MQ=255)

             tGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATgacgac                                                                               <  1:1532558/91‑1 (MQ=255)

               aaGTTAAGAGTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACaa                                                                             <  1:3974112/91‑1 (MQ=255)

                 gTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATg                                                                           >  1:2789593/1‑91 (MQ=255)

                 gTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATg                                                                           >  1:2279902/1‑91 (MQ=255)

                 gTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATg                                                                           >  1:2279889/1‑91 (MQ=255)

                 gTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATg                                                                           <  1:673700/91‑1 (MQ=255)

                 gTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATg                                                                           <  1:4106932/91‑1 (MQ=255)

                     aGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATc                                                                       <  1:3811450/91‑1 (MQ=255)

                      gATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcg                                                                      <  1:2492260‑M1/91‑23 (MQ=255)

                       aTTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgt                                                                     <  1:1715362‑M1/91‑24 (MQ=255)

                       aTTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgt                                                                     <  1:3931515‑M1/91‑24 (MQ=255)

                       aTTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgt                                                                     <  1:693102‑M1/91‑24 (MQ=255)

                       aTTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgt                                                                     <  1:2260063‑M1/91‑24 (MQ=255)

                       aTTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgt                                                                     <  1:693512‑M1/91‑24 (MQ=255)

                        ttACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgtc                                                                    <  1:1641997‑M1/91‑25 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:3777117/91‑1 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:2948416/91‑1 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:3777040/91‑1 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:3776701/91‑1 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:398585/91‑1 (MQ=255)

                          aCTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAt                                                                  <  1:398852/91‑1 (MQ=255)

                           cTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAgtcacatgacgatacattgtcgtcata                                                                 <  1:1443348‑M1/91‑28 (MQ=255)

                           cTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAtg                                                                 >  1:3186760/1‑91 (MQ=255)

                           cTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAtg                                                                 <  1:2182365/91‑1 (MQ=255)

                            tGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAtgt                                                                >  1:1250529/1‑91 (MQ=255)

                            tGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAtgt                                                                >  1:3358516/1‑91 (MQ=255)

                             gAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCAtgtg                                                               >  1:2360380/1‑91 (MQ=255)

                               aaTTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAatcacatgacgatacattgtcgtcatatgac                                                             <  1:3684687‑M1/91‑32 (MQ=255)

                               aaTTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGAt                                                             >  1:2815052/1‑91 (MQ=255)

                                aTTGATAAACAAGGTCGAGTAGATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAatcacatgacgatacattgtcgtcatatgact                                                            <  1:2197684‑M1/91‑33 (MQ=255)

                                   gATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGAttttt                                                         >  1:2396775/1‑91 (MQ=255)

                                     tAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGAttttttt                                                       >  1:1419716/1‑91 (MQ=255)

                                       aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                     >  1:3709799/1‑91 (MQ=255)

                                       aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                     <  1:3001933/91‑1 (MQ=255)

                                       aaCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTAt                                                     >  1:3709725/1‑91 (MQ=255)

                                        aCAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATg                                                    <  1:1226648/91‑1 (MQ=255)

                                         cAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGc                                                   >  1:1094046/1‑91 (MQ=255)

                                          aaGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGcc                                                  <  1:4122716/91‑1 (MQ=255)

                                          aaGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGcc                                                  <  1:917236/91‑1 (MQ=255)

                                           aGGTCGAGTGAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAatcacatgacgatacattgtcgtcatatgactttaaatattat                                                 <  1:3978078‑M1/91‑44 (MQ=255)

                                           aGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCa                                                 <  1:2758954/91‑1 (MQ=255)

                                            ggTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAatcacatgacgatacattgtcgtcatatgactttaaatattatt                                                <  1:1012057‑M1/91‑45 (MQ=255)

                                            ggTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCAc                                                >  1:737118/1‑91 (MQ=255)

                                             gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                               <  1:850975/91‑1 (MQ=255)

                                             gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                               >  1:2325604/1‑91 (MQ=255)

                                             gTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACt                                               >  1:2325716/1‑91 (MQ=255)

                                              tCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACtt                                              <  1:610115/91‑1 (MQ=255)

                                              tCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACtt                                              <  1:610131/91‑1 (MQ=255)

                                               cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                             <  1:3093195/91‑1 (MQ=255)

                                               cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                             >  1:2377235/1‑91 (MQ=255)

                                               cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                             >  1:1311839/1‑91 (MQ=255)

                                               cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                             >  1:351047/1‑91 (MQ=255)

                                               cGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACttt                                             >  1:351102/1‑91 (MQ=255)

                                                  gTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTa                                          >  1:183899/1‑91 (MQ=255)

                                                  gTAAAGGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTa                                          <  1:1222008/91‑1 (MQ=255)

                                                      aTGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGaa                                      >  1:2682248/1‑91 (MQ=255)

                                                      aTGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGGCATATGACGACAGTCTATCGTCTTGTGATTTTTTTATGCCGCTTTTTACgca                                      >  1:2898201/1‑89 (MQ=255)

                                                       tGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAg                                     >  1:3221941/1‑91 (MQ=255)

                                                         cTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTg                                   <  1:599907/91‑1 (MQ=255)

                                                           tCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGAc                                 <  1:1668830/91‑1 (MQ=255)

                                                            cacaTAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGAcc                                >  1:1137357/1‑91 (MQ=255)

                                                              caTAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCg                              >  1:2714944/1‑91 (MQ=255)

                                                                tAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGtt                            <  1:3833332/91‑1 (MQ=255)

                                                                  gagCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGtttt                          <  1:2253461/91‑1 (MQ=255)

                                                                    gCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGa                        <  1:699886/91‑1 (MQ=255)

                                                                    gCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGa                        >  1:2481969/1‑91 (MQ=255)

                                                                    gCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGa                        >  1:2481535/1‑91 (MQ=255)

                                                                     cATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGaa                       <  1:1979563/91‑1 (MQ=255)

                                                                      aTTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAAt                      >  1:472819/1‑91 (MQ=255)

                                                                        tAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAAttt                    >  1:1406506/1‑91 (MQ=255)

                                                                            agaaTAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATttgttg                >  1:4068886/1‑91 (MQ=255)

                                                                             gaaTAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTtgttgt               >  1:2459582/1‑91 (MQ=255)

                                                                              aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcatttactcgacc              <  1:1012057‑M2/91‑48 (MQ=255)

                                                                              aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTa              <  1:2915896/91‑1 (MQ=255)

                                                                              aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTa              <  1:2915913/91‑1 (MQ=255)

                                                                              aataatATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTa              <  1:2916137/91‑1 (MQ=255)

                                                                               ataataTTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTAt             >  1:2672848/1‑91 (MQ=255)

                                                                                 aataTTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTg           >  1:71722/1‑91 (MQ=255)

                                                                                   tatTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGaa         <  1:2318055/91‑1 (MQ=255)

                                                                                   tatTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGaa         <  1:2317649/91‑1 (MQ=255)

                                                                                    atTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAAc        >  1:1366883/1‑91 (MQ=255)

                                                                                    atTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAAc        >  1:1751453/1‑91 (MQ=255)

                                                                                    atTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAAc        >  1:1890750/1‑91 (MQ=255)

                                                                                       tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt     >  1:3489866/1‑91 (MQ=255)

                                                                                       tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt     >  1:2375789/1‑91 (MQ=255)

                                                                                       tAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtt     <  1:1211912/91‑1 (MQ=255)

                                                                                         aaGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACAtttt   >  1:2119990/1‑91 (MQ=255)

                                                                                          aatcacatgacgatacattgtcgtcatatgactttaaatattattcttctaatgctctatgtgaagcatttactcgaccttgtttatcaat  <  1:4099352‑M1/91‑91 (MQ=255)

                                                                                          aGTCATATGACGACAATGTATCGTCATGTGATtttaaatattattcttctaatgctctatgtgaagcatctactcgaccttgtttatcaat  <  1:2197684‑M2/91‑60 (MQ=255)

TCGGTGACACAATTGAAGTTAAGATTACTGAAATTGATAAACAAGGTCGAGTAAATGCTTCACATAGAGCATTAGAAGAATAATATTTAAAGTCATATGACGACAATGTATCGTCATGTGATTTTTTTATGCCACTTTTTACGAAGTGACCCGTTTTGAATTTGTTGTATTGAACATTTTA  >  USA300TCH1516_ALE/1298022‑1298202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.