| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1303447 | 103 (1.050) | 8 (0.090) | 5/138 | NT | 8.0% | coding (61/1266 nt) | USA300HOU_RS06440 | putative zinc protease |
| ? | USA300TCH1516_ALE | = 1303460 | 96 (1.130) | coding (74/1266 nt) | USA300HOU_RS06440 | putative zinc protease | |||||
AAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1303348‑1303447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatttaaaaACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCTCT < USA300TCH1516_ALE/1303460‑1303371 AAAATATAGATGTAAGAAGATATAGTGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTA < 1:3868547/91‑1AAAATATAGATGTAAGAAGATATAGTGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTA < 1:3868233/91‑1AAAATATAGATGTAAGAAGATATAGTGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTA < 1:3868033/91‑1AAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTA < 1:3868973/91‑1AAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTA < 1:3870983/91‑1 ATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACTACTAAAT > 1:2065125/1‑91 TATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATT < 1:2940737/91‑1 TATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATT < 1:2941524/91‑1 TATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATT < 1:2940507/91‑1 ATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTT < 1:1464947/91‑1 GATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAA > 1:2191839/1‑91 GATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAA > 1:2191572/1‑91 GATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAA > 1:3705781/1‑91 ATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAA > 1:301730/1‑91 AGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAA < 1:1601866/91‑1 AGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAA < 1:1601867/91‑1 AGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAA < 1:3878659/91‑1 GCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAAAT < 1:2267300/91‑1 CTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAAATT < 1:1231444/91‑1 ATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTGTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAAATTTA < 1:3291282/91‑1 ATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTGTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAAATTTA < 1:3292966/91‑1 TATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAAACTATAGTAGTTGTTTTAAATTTAGTT < 1:2017145/91‑1 ATTTAAAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGC < 1:3742586/91‑1 ATTTAAAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGC > 1:1064237/1‑91 TTTAAAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCC > 1:2897174/1‑91 TAAAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTC > 1:3319254/1‑91 TAAAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTC < 1:458411/91‑1 AAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCT > 1:592126/1‑91 AAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCT > 1:3258154/1‑91 AAAACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCT < 1:2943915/91‑1 AACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCTCT < 1:2869006/91‑1 AACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCTCT < 1:2868848/91‑1 AAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1303348‑1303447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaatttaaaaACTATAGTAGTTGTTTTAAATTTAGTTGTTGGTGAAACTTTGATATGTATATTTGGTTGAGATTGTCTACTCAAATATATAGCCTCCTCT < USA300TCH1516_ALE/1303460‑1303371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |