BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1303447	103 (1.050)	8 (0.090)	5/138	NT	8.0%	coding (61/1266 nt)	USA300HOU_RS06440	putative zinc protease
*	?	USA300TCH1516_ALE	= 1303460	96 (1.130)	8 (0.090)	5/138	NT	8.0%	coding (74/1266 nt)	USA300HOU_RS06440	putative zinc protease

Only 100 of 131 total aligned reads displayed.

TAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATGGCC  >  USA300TCH1516_ALE/1303370‑1303550

taGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGt                                                                                            >  1:612935/1‑91 (MQ=255)

taGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGt                                                                                            <  1:3231246/91‑1 (MQ=255)

 agagGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTt                                                                                           <  1:2869006‑M2/91‑2 (MQ=255)

 agagGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTt                                                                                           <  1:2868848‑M2/91‑2 (MQ=255)

   aggaggCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTttt                                                                                         >  1:592126‑M2/1‑88 (MQ=255)

   aggaggCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTttt                                                                                         <  1:2943915‑M2/91‑4 (MQ=255)

     gaggCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTtttta                                                                                       <  1:458411‑M2/91‑6 (MQ=255)

        gCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTttttaaat                                                                                    <  1:3742586‑M2/91‑9 (MQ=255)

        gCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTttttaaat                                                                                    >  1:1064237‑M2/1‑83 (MQ=255)

             atatTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATg                                                                               <  1:135537/91‑1 (MQ=255)

              tatTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTACAACAACTACTATAGTTTTTAAATTTATgg                                                                              >  1:3333078/1‑91 (MQ=255)

              tatTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATgg                                                                              >  1:767712/1‑91 (MQ=255)

              tatTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATgg                                                                              <  1:2850146/91‑1 (MQ=255)

              tatTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATgg                                                                              <  1:1838167/91‑1 (MQ=255)

              tatTTGAGTAGACAATCTCAACCAAATATACATATAAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATgg                                                                              <  1:3816043/91‑1 (MQ=255)

                 ttGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCAc                                                                           <  1:960377/91‑1 (MQ=255)

                 ttGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCAc                                                                           <  1:1251377/91‑1 (MQ=255)

                    aGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCtt                                                                        <  1:577664/91‑1 (MQ=255)

                    aGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCtt                                                                        <  1:546114/91‑1 (MQ=255)

                     gTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCttt                                                                       <  1:2356675/91‑1 (MQ=255)

                     gTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCttt                                                                       <  1:275232/91‑1 (MQ=255)

                       aGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAg                                                                     >  1:4065968/1‑91 (MQ=255)

                       aGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAg                                                                     >  1:2758373/1‑91 (MQ=255)

                          cAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAat                                                                  >  1:3805032/1‑91 (MQ=255)

                          cAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAat                                                                  >  1:3613006/1‑91 (MQ=255)

                           aaTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAata                                                                 >  1:2355649/1‑91 (MQ=255)

                           aaTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAata                                                                 <  1:2025269/91‑1 (MQ=255)

                           aaTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAata                                                                 <  1:2025140/91‑1 (MQ=255)

                           aaTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAata                                                                 <  1:713540/91‑1 (MQ=255)

                           aaTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAata                                                                 <  1:3798793/91‑1 (MQ=255)

                            aTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAatat                                                                >  1:3254857/1‑91 (MQ=255)

                            aTCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAatat                                                                >  1:3254918/1‑91 (MQ=255)

                               tcAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGac                                                             >  1:837818/1‑91 (MQ=255)

                               tcAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGac                                                             <  1:1426371/91‑1 (MQ=255)

                               tcAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGac                                                             >  1:517304/1‑91 (MQ=255)

                               tcAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGac                                                             <  1:1426360/91‑1 (MQ=255)

                               tcAACCAAATATACACAACACAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTATTTAAATTTCTGGCACCTATAGAATATGac                                                             >  1:1233940/1‑91 (MQ=255)

                                 aaCCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGacac                                                           <  1:2142072/91‑1 (MQ=255)

                                  aCCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGAcaca                                                          <  1:765931/91‑1 (MQ=255)

                                  aCCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGAcaca                                                          <  1:1180692/91‑1 (MQ=255)

                                    cAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACTCAAt                                                        >  1:3450489/1‑91 (MQ=255)

                                      aaTATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATaa                                                      <  1:2569378/91‑1 (MQ=255)

                                         ataCATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAg                                                   >  1:1914887/1‑91 (MQ=255)

                                           aCATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCt                                                 <  1:1967779/91‑1 (MQ=255)

                                           aCATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCt                                                 <  1:1967397/91‑1 (MQ=255)

                                           aCATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCt                                                 >  1:2257/1‑91 (MQ=255)

                                             atatCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAg                                               <  1:4101634/91‑1 (MQ=255)

                                             atatCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAg                                               <  1:3997804/91‑1 (MQ=255)

                                              tatCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGa                                              <  1:2291427/91‑1 (MQ=255)

                                                tCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATc                                            <  1:3687463/91‑1 (MQ=255)

                                                tCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATc                                            >  1:1366656/1‑91 (MQ=255)

                                                tCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATc                                            >  1:1366457/1‑91 (MQ=255)

                                                   aaGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAACTTTATGGCACCTTTAGCATATGACACAATAACAGCTAGATCatt                                         >  1:1718903/1‑91 (MQ=255)

                                                   aaGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCatt                                         >  1:1718419/1‑91 (MQ=255)

                                                      tttCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCattatt                                      <  1:1744973/91‑1 (MQ=255)

                                                        tCACCGACAACTAAATTTAAAACAAGTACTATAGTTTTTCAATTTATGGCACCGTTAGAATATGACACAATAACAGCTAGATCATTATTaa                                    <  1:3863967/91‑1 (MQ=255)

                                                        tCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTaa                                    <  1:1196214/91‑1 (MQ=255)

                                                        tCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTaa                                    <  1:359871/91‑1 (MQ=255)

                                                        tCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTaa                                    >  1:4033779/1‑91 (MQ=255)

                                                         cACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAg                                   >  1:1333863/1‑91 (MQ=255)

                                                         cACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAg                                   >  1:237825/1‑91 (MQ=255)

                                                         cACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAg                                   >  1:1154220/1‑91 (MQ=255)

                                                          aCCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGc                                  >  1:3993417/1‑91 (MQ=255)

                                                           ccAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCa                                 >  1:1522503/1‑91 (MQ=255)

                                                           ccAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCa                                 >  1:2325501/1‑91 (MQ=255)

                                                            caacaaCTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCaa                                >  1:2143263/1‑91 (MQ=255)

                                                               caacTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAatt                             >  1:1149835/1‑91 (MQ=255)

                                                                aacTAAATTTAACACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAatta                            >  1:3187958/1‑91 (MQ=255)

                                                                aacTAAATTTAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaata                            <  1:2017145‑M2/91‑65 (MQ=255)

                                                                aacTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAatta                            >  1:2133564/1‑91 (MQ=255)

                                                                  cTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATTACAGCTAGATCATTATTAAGCAAattatt                          >  1:3303012/1‑91 (MQ=255)

                                                                  cTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAattatt                          <  1:3432688/91‑1 (MQ=255)

                                                                   tAAATTTAAAACAACTACTATAGTttttaaatttagttgttggtgacactttgatatgtatatttggttgagattgtctactcaaatatat                         <  1:3292966‑M2/91‑68 (MQ=255)

                                                                   tAAATTTAAAACAACTACTATAGTttttaaatttagttgttggtgacactttgatatgtatatttggttgagattgtctactcaaatatat                         <  1:3291282‑M2/91‑68 (MQ=255)

                                                                    aaaTTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAg                        <  1:1442656/91‑1 (MQ=255)

                                                                    aaaTTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAg                        <  1:82725/91‑1 (MQ=255)

                                                                     aaTTTAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaatatatag                       <  1:1231444‑M2/91‑70 (MQ=255)

                                                                     aaTTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGt                       >  1:3708724/1‑91 (MQ=255)

                                                                      aTTTAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaatatatagc                      <  1:2267300‑M2/91‑71 (MQ=255)

                                                                        ttAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaatatatagcct                    <  1:3878659‑M2/91‑73 (MQ=255)

                                                                        ttAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaatatatagcct                    <  1:1601867‑M2/91‑73 (MQ=255)

                                                                        ttAAAACAACTACTATAGTttttaaatttagttgttggtgaaactttgatatgtatatttggttgagattgtctactcaaatatatagcct                    <  1:1601866‑M2/91‑73 (MQ=255)

                                                                         tAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGa                   <  1:911539/91‑1 (MQ=255)

                                                                           aaaCGACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCCAGc                 >  1:3271746/1‑91 (MQ=255)

                                                                            aacaacTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCa                <  1:577040/91‑1 (MQ=255)

                                                                            aacaacTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCa                <  1:1533815/91‑1 (MQ=255)

                                                                            aacaacTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCa                >  1:950724/1‑91 (MQ=255)

                                                                               aacTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACt             <  1:941453/91‑1 (MQ=255)

                                                                               aacTACTATAGTTTTTAAATTTATGACACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACt             <  1:3859418/91‑1 (MQ=255)

                                                                                actactATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTa            >  1:3055101/1‑91 (MQ=255)

                                                                                actactATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTa            >  1:3999867/1‑91 (MQ=255)

                                                                                actactATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTa            >  1:3811959/1‑91 (MQ=255)

                                                                                 ctactaTAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTaa           >  1:135694/1‑91 (MQ=255)

                                                                                   actaTAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGa         <  1:552113/91‑1 (MQ=255)

                                                                                    ctaTAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGaa        >  1:4104819/1‑91 (MQ=255)

                                                                                      ataGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAAt      >  1:1096143/1‑91 (MQ=255)

                                                                                      ataGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAAt      >  1:1090986/1‑91 (MQ=255)

                                                                                       taGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATg     <  1:822214/91‑1 (MQ=255)

                                                                                        aGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATgg    >  1:1651338/1‑91 (MQ=255)

                                                                                         gTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATGGc   <  1:3497396/91‑1 (MQ=255)

TAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAATTTATGGCACCTTTAGAATATGACACAATAACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAATGGCC  >  USA300TCH1516_ALE/1303370‑1303550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.