| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1314645 | 91 (0.930) | 9 (0.100) | 5/150 | NT | 9.8% | intergenic (+66/‑74) | USA300HOU_RS06490/korA | hypothetical protein/2‑oxoglutarate oxidoreductase subunit KorA |
| ? | USA300TCH1516_ALE | = 1314663 | 80 (0.870) | intergenic (+84/‑56) | USA300HOU_RS06490/korA | hypothetical protein/2‑oxoglutarate oxidoreductase subunit KorA | |||||
ATGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1314551‑1314645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTAAA < USA300TCH1516_ALE/1314663‑1314575 ATGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTA > 1:150044/1‑91 TGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTAC > 1:3347584/1‑91 TGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTAC > 1:2858039/1‑91 TGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTAC > 1:1076236/1‑91 GATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACC > 1:2685123/1‑91 GATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACC > 1:2109859/1‑91 TAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGG < 1:207689/91‑1 AATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGGTAC < 1:843170/91‑1 ATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGGTACT < 1:2736646/91‑1 TTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGGTACTA < 1:1756611/91‑1 TTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGGTACTA < 1:940602/91‑1 TTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACCGATTTACTATGTAAACAGTGGTACTA < 1:940656/91‑1 CGTCCATTAGTATGAATTTAATATAGAACCACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCC < 1:2037350/91‑1 CGTCCATTAGTATGAATTTAATATAGAACCACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCC < 1:1775391/91‑1 CGTCCATCAGTATGAAGTTAATATAGTACCACCGATTTACTATGGAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCC < 1:2065009/91‑1 CCACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTA > 1:3245306/1‑91 CCACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTA < 1:342895/91‑1 CACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTAA > 1:2092545/1‑91 CACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTAA > 1:1710508/1‑91 ACCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTAAA > 1:4047454/1‑91 ATGATGACCATCCATTTTCAACATTTTAAAATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1314551‑1314645‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacCGATTTACTATGTAAACAGTGGTACTATATTAAATTCATACTAATGGACGATAGGGTCCAATTCGAATGTTTACTTACGTAATTTTAAA < USA300TCH1516_ALE/1314663‑1314575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |