| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1317352 = | 91 (0.930) | 9 (0.100) | 6/140 | NT | 10.9% | intergenic (+6/‑88) | korB/USA300HOU_RS06505 | 2‑oxoglutarate oxidoreductase subunit KorB/hypothetical protein |
| ? | USA300TCH1516_ALE | 1317407 = | 68 (0.790) | intergenic (+61/‑33) | korB/USA300HOU_RS06505 | 2‑oxoglutarate oxidoreductase subunit KorB/hypothetical protein | |||||
TGTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1317449‑1317352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcagttttTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGACAAT > USA300TCH1516_ALE/1317407‑1317496 TGTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACT < 1:2585131/91‑1TGTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATGTATACGACT < 1:2091443/91‑1 GTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTC < 1:3799495/91‑1 GTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTC < 1:481391/91‑1 TCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCA > 1:3963759/1‑91 TCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCA > 1:3742457/1‑91 TTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGT < 1:98483/91‑1 TTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGT > 1:1826762/1‑91 CATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTT > 1:2253793/1‑91 CATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTT > 1:2968590/1‑91 CATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTT < 1:3142274/91‑1 CTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATGCTACTCAGTTTTTTACTATTACAA > 1:2703789/1‑91 TTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTTTTACTATTACAAAAAATAAAG > 1:3712550/1‑91 TTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTTTTACTATTACAAAAAATAAAGGAG > 1:682220/1‑91 AAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGAGTCAGTTTTTTACTATTACAAAAAATAAAGTAGTTTTTAAAAAT > 1:4142884/1‑91 AAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGAGTCAGTTTTTTACTATTACAAAAAATAAAGTAGTTTTTAAAAAT > 1:4142277/1‑91 AAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAAT > 1:3519804/1‑91 AAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTTTTACTATTACAAAAAATAAAGCAGTTTTTAAAAAT > 1:4145084/1‑91 GAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGAC > 1:461257/1‑91 TGTTATAAATACATTTATGCTACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAA > 1:1272023/1‑91 ACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTGTACAAATAATTCCTAAAACACCAAAC > 1:48600/1‑91 ACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACACATAATTCCTAAAACACCAAAC > 1:1848551/1‑91 ACTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAAC > 1:3787472/1‑91 CTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACA < 1:730677/91‑1 CTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACA < 1:1179267/91‑1 CTCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACA < 1:1285799/91‑1 TCAGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAA < 1:1161916/91‑1 AGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATG > 1:3136931/1‑91 AGTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATG > 1:989340/1‑91 GTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGA < 1:4114693/91‑1 GTTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGA > 1:3544374/1‑91 TTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGAC < 1:2951755/91‑1 TTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGAC < 1:2951596/91‑1 TTTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGAC < 1:2179270/91‑1 TTTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGACA > 1:534222/1‑91 TTTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGACAA > 1:1490298/1‑91 TTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGACAAT > 1:254252/1‑91 TGTCTTTCATTTTTAAAAACTCCTTTATTTTTTGTAATAGTAAAAAACTGAGTAGCATAAATGGATCTGTTATAAATACATTTATACGACTCAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1317449‑1317352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actcagttttTTACTATTACAAAAAATAAAGGAGTTTTTAAAAATGAAAGACACATTAATGAGTATACAAATAATTCCTAAAACACCAAACAATGACAAT > USA300TCH1516_ALE/1317407‑1317496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |