| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1323767 = | 128 (1.300) | 6 (0.070) | 4/148 | NT | 5.3% | coding (539/2010 nt) | mutL | DNA mismatch repair protein MutL |
| ? | USA300TCH1516_ALE | 1323805 = | 98 (1.080) | coding (577/2010 nt) | mutL | DNA mismatch repair protein MutL | |||||
AAATCTCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1323862‑1323767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACAT > USA300TCH1516_ALE/1323805‑1323894 AAATCTCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGG < 1:798937/91‑1AAATCTCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGG < 1:1975709/91‑1 ATCTCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGAT < 1:4101073/91‑1 TCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGC > 1:964564/1‑91 TTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGCTGG > 1:3728693/1‑91 TTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGG > 1:3728122/1‑91 TGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAG > 1:2076994/1‑91 CATCTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGA > 1:2377951/1‑91 CTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTT > 1:2470364/1‑91 CTGAAATGAGTGCTATTCGAATGTCCGGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTT > 1:2470365/1‑91 ATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGT > 1:2652743/1‑91 ATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGT > 1:3725846/1‑91 TGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTA < 1:398938/91‑1 TGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTA < 1:1189853/91‑1 GGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTAC > 1:1047504/1‑91 GGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTAC < 1:2311431/91‑1 GCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACA > 1:577901/1‑91 GCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACA > 1:165581/1‑91 CAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACAT > 1:4126831/1‑91 AAATCTCTGCCATCACTTCATTAGTTCGTCCTGAACCATTTGTACTTAACATTGTTTTGCCATCTGAAATGAGTGCTATTCGAATGTCCGGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1323862‑1323767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACAT > USA300TCH1516_ALE/1323805‑1323894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |