BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1323767 =	128 (1.300)	6 (0.070)	4/148	NT	5.3%	coding (539/2010 nt)	mutL	DNA mismatch repair protein MutL
*	?	USA300TCH1516_ALE	1323805 =	98 (1.080)	6 (0.070)	4/148	NT	5.3%	coding (577/2010 nt)	mutL	DNA mismatch repair protein MutL

Only 100 of 161 total aligned reads displayed.

TTTATAATACACCAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGA  >  USA300TCH1516_ALE/1323677‑1323857

atgtactaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttg                                                                                            >  1:4126831‑M1/91‑91 (MQ=255)

 tgtactaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGc                                                                                           >  1:577901‑M1/90‑91 (MQ=255)

  gtactaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGcc                                                                                          >  1:1047504‑M1/89‑91 (MQ=255)

   tactaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCa                                                                                         <  1:1189853‑M1/4‑1 (MQ=255)

   tactaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCa                                                                                         <  1:398938‑M1/4‑1 (MQ=255)

    actaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCAt                                                                                        >  1:3725846‑M1/87‑91 (MQ=255)

    actaaatctcgtgcaactttcatcccataaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCAt                                                                                        >  1:2652743‑M1/87‑91 (MQ=255)

     aataCACCAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATc                                                                                       >  1:3883499/1‑91 (MQ=255)

     aataCACCAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATc                                                                                       <  1:3031007/91‑1 (MQ=255)

        acacCAGCACGTTTAAAATATATTATAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCgg                                                                                    <  1:3870830/91‑1 (MQ=255)

        acacCAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCgg                                                                                    >  1:3784558/1‑91 (MQ=255)

           ccAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACa                                                                                 >  1:114347/1‑91 (MQ=255)

           ccAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACa                                                                                 <  1:726496/91‑1 (MQ=255)

           ccAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACa                                                                                 <  1:1021500/91‑1 (MQ=255)

             aGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACAtt                                                                               <  1:2702637/91‑1 (MQ=255)

             aGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACAtt                                                                               <  1:2518071/91‑1 (MQ=255)

             aGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACAtt                                                                               <  1:2039491/91‑1 (MQ=255)

              gCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTc                                                                              >  1:1684929/1‑91 (MQ=255)

              gCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTc                                                                              >  1:2229253/1‑91 (MQ=255)

                   tttAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATa                                                                         >  1:413845/1‑91 (MQ=255)

                   tttAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATa                                                                         >  1:3607258/1‑91 (MQ=255)

                     tAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGc                                                                       <  1:265519/91‑1 (MQ=255)

                     tAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGc                                                                       >  1:2128233/1‑91 (MQ=255)

                       aaaTATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCAc                                                                     >  1:2414784/1‑91 (MQ=255)

                        aaTATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACt                                                                    >  1:3564681/1‑91 (MQ=255)

                        aaTATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGCCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACt                                                                    <  1:126794/91‑1 (MQ=255)

                         atatatTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTc                                                                   <  1:3918445/91‑1 (MQ=255)

                            tatTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCAtt                                                                >  1:3099850/1‑91 (MQ=255)

                            tatTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCAtt                                                                >  1:2718805/1‑91 (MQ=255)

                            tatTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCAtt                                                                >  1:844228/1‑91 (MQ=255)

                              ttAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTc                                                              <  1:3218225/91‑1 (MQ=255)

                               tAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCa                                                             >  1:2383152/1‑91 (MQ=255)

                               tAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCa                                                             >  1:3379188/1‑91 (MQ=255)

                                aaatctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCATCCGGACATTCGAATAGCACTCATTTCAg                                                            >  1:2470365‑M1/59‑91 (MQ=255)

                                   tctctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCATCCGGACATTCGAATAGCACTCATTTCAGATg                                                         >  1:2377951‑M1/56‑91 (MQ=255)

                                    gTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATgg                                                        <  1:3565205/91‑1 (MQ=255)

                                    gTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCAATCCGGACATTCGAATAGCACTCATTTCAGATgg                                                        <  1:78541/91‑1 (MQ=255)

                                      ttATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                      <  1:3876816/91‑1 (MQ=255)

                                      ttATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                      <  1:270133/91‑1 (MQ=255)

                                      ttATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                      >  1:1026602/1‑91 (MQ=255)

                                      ctgccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                      >  1:2076994‑M1/53‑91 (MQ=255)

                                       tataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaa                                                     <  1:1049675/91‑1 (MQ=255)

                                       tataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaa                                                     >  1:3981594/1‑91 (MQ=255)

                                       tataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaa                                                     >  1:1536064/1‑91 (MQ=255)

                                        ataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaaa                                                    >  1:2298715/1‑91 (MQ=255)

                                         ccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaaaa                                                   >  1:3728122‑M1/50‑91 (MQ=255)

                                          acattGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  >  1:816304/5‑91 (MQ=255)

                                          acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  >  1:1185245/1‑91 (MQ=255)

                                          acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  >  1:610084/1‑91 (MQ=255)

                                          acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  <  1:1750263/91‑1 (MQ=255)

                                          acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  <  1:2384160/91‑1 (MQ=255)

                                          acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  >  1:1653470/1‑91 (MQ=255)

                                          acacTGAACTAAGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                  <  1:3762262/91‑1 (MQ=255)

                                           cacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACa                                                 <  1:1154149/91‑1 (MQ=255)

                                            acTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACaa                                                <  1:810768/91‑1 (MQ=255)

                                            acTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACaa                                                <  1:1544955/91‑1 (MQ=255)

                                             cTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAAt                                               <  1:3843513/91‑1 (MQ=255)

                                                  cTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTaa                                          >  1:1339995/1‑91 (MQ=255)

                                                   tAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAg                                         >  1:3228743/1‑91 (MQ=255)

                                                   tAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAg                                         >  1:1629623/1‑91 (MQ=255)

                                                     ggTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTa                                       >  1:2891791/1‑91 (MQ=255)

                                                     ggTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTa                                       <  1:702618/91‑1 (MQ=255)

                                                      gTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCTAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTAc                                      <  1:349316/91‑1 (MQ=255)

                                                      gTAAAATAACAGATAATGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTAc                                      <  1:349432/91‑1 (MQ=255)

                                                       tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                     <  1:3115671/91‑1 (MQ=255)

                                                       tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                     <  1:3062415/91‑1 (MQ=255)

                                                       tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                     <  1:3653137/91‑1 (MQ=255)

                                                       tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                     <  1:3651307/91‑1 (MQ=255)

                                                          aaTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAAt                                  >  1:255905/1‑91 (MQ=255)

                                                          aaTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAAt                                  <  1:2846335/91‑1 (MQ=255)

                                                           aTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAAta                                 >  1:2294796/1‑90 (MQ=255)

                                                            tAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATgg                                <  1:611516/91‑1 (MQ=255)

                                                            tAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATgg                                >  1:1323295/1‑91 (MQ=255)

                                                               cAGATATTGTCAGCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTc                             >  1:3197503/1‑91 (MQ=255)

                                                                 gATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAg                           >  1:777408/1‑91 (MQ=255)

                                                                  atatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAgg                          >  1:2529129/1‑91 (MQ=255)

                                                                  atatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAgg                          >  1:1854746/1‑91 (MQ=255)

                                                                   tatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGa                         >  1:2349859/1‑91 (MQ=255)

                                                                      tGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGa                      <  1:450811/91‑1 (MQ=255)

                                                                      tGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGa                      <  1:640651/91‑1 (MQ=255)

                                                                       gTCAACAGGATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                     <  1:3105726/91‑1 (MQ=255)

                                                                       gTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                     >  1:1614810/1‑91 (MQ=255)

                                                                          aaCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTa                  <  1:3418394/91‑1 (MQ=255)

                                                                          aaCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTa                  <  1:3418470/91‑1 (MQ=255)

                                                                            cAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAAt                >  1:476060/1‑91 (MQ=255)

                                                                             aGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATg               <  1:2981914/91‑1 (MQ=255)

                                                                                 tggtaaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt           >  1:3849565/5‑91 (MQ=255)

                                                                                 tGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt           >  1:395396/1‑91 (MQ=255)

                                                                                 tGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt           <  1:2343700/91‑1 (MQ=255)

                                                                                   gCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGa         >  1:2445703/1‑91 (MQ=255)

                                                                                   gCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGa         >  1:2196139/1‑91 (MQ=255)

                                                                                    cAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGAt        >  1:165649/1‑91 (MQ=255)

                                                                                     aaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATg       >  1:2723615/1‑91 (MQ=255)

                                                                                     aaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATg       >  1:2723349/1‑91 (MQ=255)

                                                                                      aTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATgg      <  1:3473849/91‑1 (MQ=255)

                                                                                       tGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGc     >  1:2056173/1‑91 (MQ=255)

                                                                                        gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa    >  1:174370/1‑91 (MQ=255)

                                                                                        gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa    <  1:1101189/91‑1 (MQ=255)

                                                                                         aGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACTATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCag   <  1:3284017/91‑1 (MQ=255)

                                                                                          GCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCaga  >  1:964564‑M1/1‑91 (MQ=255)

TTTATAATACACCAGCACGTTTAAAATATATTAAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGA  >  USA300TCH1516_ALE/1323677‑1323857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.