BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1323767 =	128 (1.300)	6 (0.070)	4/148	NT	5.3%	coding (539/2010 nt)	mutL	DNA mismatch repair protein MutL
*	?	USA300TCH1516_ALE	1323805 =	98 (1.080)	6 (0.070)	4/148	NT	5.3%	coding (577/2010 nt)	mutL	DNA mismatch repair protein MutL

Only 100 of 144 total aligned reads displayed.

TTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACATA  >  USA300TCH1516_ALE/1323715‑1323895

ttATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                                                            >  1:1026602/1‑91 (MQ=255)

ttATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCa                                                                                            >  1:253485/1‑91 (MQ=255)

 tataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaa                                                                                           >  1:3981594/1‑91 (MQ=255)

 tataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaa                                                                                           >  1:1536064/1‑91 (MQ=255)

  ataCACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaaa                                                                                          >  1:814077/1‑91 (MQ=255)

   ccatcacttcattagttcgtcctgaaccatttgtacttaacattgttttGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCaaaa                                                                                         >  1:3728122‑M1/50‑91 (MQ=255)

    acattGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        >  1:816304/5‑91 (MQ=255)

    acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        >  1:102863/1‑91 (MQ=255)

    acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        <  1:1750263/91‑1 (MQ=255)

    acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        <  1:3957612/91‑1 (MQ=255)

    acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        >  1:610084/1‑91 (MQ=255)

    acacTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        >  1:1185245/1‑91 (MQ=255)

    acacTGAACTAAGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAAc                                                                                        <  1:3762262/91‑1 (MQ=255)

      acTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACaa                                                                                      <  1:1544955/91‑1 (MQ=255)

      acTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACaa                                                                                      <  1:3470301/91‑1 (MQ=255)

      acTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACaa                                                                                      <  1:810737/91‑1 (MQ=255)

            cTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTaa                                                                                >  1:1339995/1‑91 (MQ=255)

             tAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAg                                                                               >  1:1629623/1‑91 (MQ=255)

             tAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAg                                                                               >  1:3228743/1‑91 (MQ=255)

               ggTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTa                                                                             <  1:702618/91‑1 (MQ=255)

               ggTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTa                                                                             >  1:2891791/1‑91 (MQ=255)

               ggTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATGTCAGATGGCAAAACAATGTTAAGTa                                                                             >  1:3845962/1‑91 (MQ=255)

                gTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCTAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTAc                                                                            <  1:349316/91‑1 (MQ=255)

                gTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTAc                                                                            <  1:349759/91‑1 (MQ=255)

                gTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTAc                                                                            <  1:349191/91‑1 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           <  1:3062415/91‑1 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           >  1:598352/1‑91 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           >  1:2700521/1‑91 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           <  1:3653137/91‑1 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           <  1:3651307/91‑1 (MQ=255)

                 tAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACa                                                                           <  1:3115671/91‑1 (MQ=255)

                   aaaTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACaaa                                                                         >  1:2773973/1‑91 (MQ=255)

                    aaTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAAt                                                                        <  1:2846335/91‑1 (MQ=255)

                     aTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAAta                                                                       >  1:2294796/1‑90 (MQ=255)

                     aTAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATg                                                                       <  1:110850/91‑1 (MQ=255)

                      tAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATgg                                                                      >  1:1323295/1‑91 (MQ=255)

                         cAGATATTGTCAGCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTc                                                                   >  1:3197503/1‑91 (MQ=255)

                            atatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAgg                                                                >  1:3573097/1‑91 (MQ=255)

                            atatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAgg                                                                >  1:2529129/1‑91 (MQ=255)

                            atatTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAgg                                                                >  1:1854746/1‑91 (MQ=255)

                                tGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGa                                                            <  1:450811/91‑1 (MQ=255)

                                 gTCAACAGGATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                                                           <  1:3105726/91‑1 (MQ=255)

                                 gTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                                                           >  1:1614810/1‑91 (MQ=255)

                                 gTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                                                           <  1:3877747/91‑1 (MQ=255)

                                 gTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGaa                                                           <  1:3105923/91‑1 (MQ=255)

                                   cAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACt                                                         >  1:624207/1‑91 (MQ=255)

                                    aaCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTa                                                        <  1:3418470/91‑1 (MQ=255)

                                    aaCAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTa                                                        <  1:3418394/91‑1 (MQ=255)

                                      cAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAAt                                                      >  1:476060/1‑91 (MQ=255)

                                       aGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATg                                                     >  1:2355164/1‑91 (MQ=255)

                                       aGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATg                                                     <  1:2981914/91‑1 (MQ=255)

                                           tggtaaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt                                                 >  1:3849565/5‑91 (MQ=255)

                                           tGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt                                                 >  1:395396/1‑91 (MQ=255)

                                           tGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGt                                                 <  1:2343700/91‑1 (MQ=255)

                                             gCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGa                                               >  1:2445703/1‑91 (MQ=255)

                                             gCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGa                                               >  1:2196139/1‑91 (MQ=255)

                                              cAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGAt                                              >  1:165649/1‑91 (MQ=255)

                                               aaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATg                                             >  1:2723349/1‑91 (MQ=255)

                                               aaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATg                                             >  1:2723214/1‑91 (MQ=255)

                                               aaTGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATg                                             >  1:2723615/1‑91 (MQ=255)

                                                ttttgccatctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGCTgg                                            >  1:3728693‑M2/43‑91 (MQ=255)

                                                ttttgccatctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATgg                                            >  1:3728122‑M2/43‑91 (MQ=255)

                                                aTGAGCCATCCGAACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATgg                                            >  1:3610683/1‑91 (MQ=255)

                                                 tGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGc                                           >  1:2056173/1‑91 (MQ=255)

                                                  gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa                                          >  1:3370262/1‑91 (MQ=255)

                                                  gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa                                          <  1:1101189/91‑1 (MQ=255)

                                                  gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa                                          >  1:173928/1‑91 (MQ=255)

                                                  gAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCa                                          >  1:174370/1‑91 (MQ=255)

                                                   tgccatctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCag                                         >  1:2076994‑M2/40‑91 (MQ=255)

                                                   aGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCag                                         <  1:644193/91‑1 (MQ=255)

                                                    GCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCaga                                        >  1:964564‑M1/1‑91 (MQ=255)

                                                      catctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAgaga                                      >  1:2377951‑M2/37‑91 (MQ=255)

                                                         ctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGAttt                                   >  1:2470364‑M2/34‑91 (MQ=255)

                                                         ctgaaatgagtgctattcgaatgtccggatggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGAttt                                   >  1:2470365‑M2/34‑91 (MQ=255)

                                                         CCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGAttt                                   <  1:798937‑M1/91‑1 (MQ=255)

                                                         CCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGAttt                                   <  1:1975709‑M1/91‑1 (MQ=255)

                                                             aCATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGGACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATgg                               <  1:4139955/91‑1 (MQ=255)

                                                              cATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATggg                              >  1:3155941/1‑91 (MQ=255)

                                                                ttCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGAt                            <  1:1682873/91‑1 (MQ=255)

                                                                    aaTAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGaaa                        >  1:26216/1‑91 (MQ=255)

                                                                      tAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGt                      <  1:1843721/91‑1 (MQ=255)

                                                                         cACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGc                   >  1:2921064/1‑91 (MQ=255)

                                                                          aCTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCa                  >  1:733043/1‑91 (MQ=255)

                                                                           cTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCAc                 <  1:3426386/91‑1 (MQ=255)

                                                                           cTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCAc                 <  1:3930844/91‑1 (MQ=255)

                                                                           cTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCAc                 <  1:3927822/91‑1 (MQ=255)

                                                                           actgtttCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCAc                 <  1:3240661/87‑1 (MQ=255)

                                                                            tCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACg                <  1:1874741/91‑1 (MQ=255)

                                                                            tCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACg                >  1:90688/1‑91 (MQ=255)

                                                                             cATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACga               <  1:1271846/91‑1 (MQ=255)

                                                                                ttCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGAt            <  1:2611895/91‑1 (MQ=255)

                                                                                   aGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTa         >  1:620987/1‑91 (MQ=255)

                                                                                     atggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGt       >  1:2652743‑M2/6‑91 (MQ=255)

                                                                                      tggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTa      <  1:1189853‑M2/87‑1 (MQ=255)

                                                                                      tggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTa      <  1:398938‑M2/87‑1 (MQ=255)

                                                                                       ggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTAc     <  1:2311431‑M2/88‑1 (MQ=255)

                                                                                       ggcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTAc     >  1:1047504‑M2/4‑91 (MQ=255)

                                                                                        gcAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACa    >  1:165581‑M2/3‑91 (MQ=255)

                                                                                         cAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACAt   >  1:4126831‑M2/2‑91 (MQ=255)

                                                                                          aaaaCAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACata  <  1:478990/91‑1 (MQ=255)

TTATACACTGAACTAGGTAAAATAACAGATATTGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGCACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGATGAAAGTTGCACGAGATTTAGTACATA  >  USA300TCH1516_ALE/1323715‑1323895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.