| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1332949 | 84 (0.850) | 7 (0.090) | 5/124 | NT | 8.1% | intergenic (+159/+63) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA |
| ? | USA300TCH1516_ALE | = 1332971 | 94 (1.230) | intergenic (+181/+41) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA | |||||
TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1332842‑1332949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaa‑gTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT < USA300TCH1516_ALE/1332971‑1332882 TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA < 1:1353199/91‑1 GATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAA > 1:2641232/1‑91 AAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGC > 1:1956045/1‑91 ATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTT > 1:966967/1‑91 TAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTC > 1:2818128/1‑91 TAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTC > 1:225085/1‑91 AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA < 1:1563972/91‑1 AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA > 1:2201977/1‑91 GATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCAT > 1:1296187/1‑91 ATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATA > 1:947897/1‑91 TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT > 1:1928249/1‑91 TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT > 1:1928560/1‑91 TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT > 1:1928961/1‑91 TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT < 1:1515404/91‑1 TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT < 1:2517939/91‑1 ATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATA < 1:1187747/91‑1 AGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA > 1:559378/1‑91 AGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA > 1:375357/1‑91 GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑G < 1:25243/91‑1 TCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGA < 1:207506/91‑1 AATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACC < 1:3464970/91‑1 ATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCT < 1:2611569/91‑1 TAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTT < 1:420698/91‑1 AAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGTATCATATATTGACTCGACCTTT < 1:1450391/91‑1 AATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTAT < 1:634895/91‑1 AATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTAT < 1:634896/91‑1 AAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATT > 1:1604279/1‑91 AAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATT > 1:1604356/1‑91 AAACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATT > 1:1605097/1‑91 ACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG < 1:316211/91‑1 ACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG < 1:316231/91‑1 ACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG < 1:315738/91‑1 ACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG < 1:3564070/91‑1 ACGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG < 1:2594672/91‑1 CGCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGA > 1:4106296/1‑91 GCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAA > 1:3556778/1‑91 GCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAA > 1:2909201/1‑91 GCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAA > 1:3147778/1‑91 GCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAA > 1:3068256/1‑91 GCTTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAA > 1:3148163/1‑91 TTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACA < 1:2935695/91‑1 TTCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACA < 1:686710/91‑1 TCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACAT < 1:4114316/91‑1 TCATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACAT < 1:2455290/91‑1 CATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATC > 1:1795846/1‑91 ATATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCA < 1:28111/91‑1 TATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCAT < 1:2481498/91‑1 TATAAA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCAT < 1:2481603/91‑1 AA‑GTCGTATCATATATTGACTCGACGTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAA < 1:3863654/91‑1 AA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAA > 1:2472576/1‑91 AA‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAA > 1:2471957/1‑91 A‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT < 1:247342/91‑1 A‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT < 1:181443/91‑1 A‑GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT < 1:954242/91‑1 GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT < 1:1461854/91‑1 TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1332842‑1332949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaa‑gTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT < USA300TCH1516_ALE/1332971‑1332882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |