BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1332949	84 (0.850)	7 (0.090)	5/124	NT	8.1%	intergenic (+159/+63)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA
*	?	USA300TCH1516_ALE	= 1332971	94 (1.230)	7 (0.090)	5/124	NT	8.1%	intergenic (+181/+41)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 167 total aligned reads displayed.

GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCG  >  USA300TCH1516_ALE/1332859‑1333039

gAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑G                                                                                            <  1:25243‑M1/91‑1 (MQ=255)

  aaTAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGt                                                                                          <  1:204343/91‑1 (MQ=255)

    tAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCg                                                                                        >  1:49839/1‑91 (MQ=255)

     aaaGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGa                                                                                       <  1:1483836/91‑1 (MQ=255)

      aaGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAg                                                                                      >  1:3554177/1‑91 (MQ=255)

        gTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTc                                                                                    >  1:1874765/1‑91 (MQ=255)

        gTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTc                                                                                    >  1:200381/1‑91 (MQ=255)

        gTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTc                                                                                    >  1:2024456/1‑91 (MQ=255)

          cATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCaa                                                                                  >  1:1593517/1‑91 (MQ=255)

            taagtgACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAata                                                                                >  1:2103056/4‑91 (MQ=255)

                     tcatttAATTGATG‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGa                                                                      >  1:2974389/5‑91 (MQ=255)

                     tCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACg                                                                       >  1:4095401/1‑91 (MQ=255)

                     tCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACg                                                                       >  1:4095324/1‑91 (MQ=255)

                      cAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGa                                                                      >  1:2256977/1‑91 (MQ=255)

                      cAATTAAATGAGGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGa                                                                      <  1:3762556/91‑1 (MQ=255)

                       aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑Gtcgtatcatatattgactcgacc                                                                     <  1:3464970‑M1/91‑24 (MQ=255)

                        aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑Gtcgtatcatatattgactcgacct                                                                    <  1:2611569‑M1/91‑25 (MQ=255)

                         ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActt                                                                   >  1:2472576‑M2/1‑88 (MQ=255)

                         ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActt                                                                   >  1:2471957‑M2/1‑88 (MQ=255)

                         ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑CGTCGAGTCAATATATGATACGActt                                                                   <  1:3863654‑M2/91‑4 (MQ=255)

                          tAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑Gtcgtatcatatattgactcgaccttt                                                                  <  1:420698‑M1/91‑27 (MQ=255)

                           aaaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGtcgtatcatatattgactcgaccttt                                                                  <  1:1450391‑M1/91‑27 (MQ=255)

                            aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttat                                                                <  1:634895‑M1/91‑29 (MQ=255)

                            aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttat                                                                <  1:634896‑M1/91‑29 (MQ=255)

                             atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttata                                                               <  1:2481498‑M2/91‑8 (MQ=255)

                              tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatat                                                              <  1:28111‑M2/91‑9 (MQ=255)

                               gatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatg                                                             >  1:1795846‑M2/1‑82 (MQ=255)

                                atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatga                                                            <  1:2455290‑M2/91‑11 (MQ=255)

                                atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatga                                                            <  1:4114316‑M2/91‑11 (MQ=255)

                                 tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaa                                                           <  1:686710‑M2/91‑12 (MQ=255)

                                   ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagc                                                         >  1:3147778‑M2/1‑78 (MQ=255)

                                   ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagc                                                         >  1:3068256‑M2/1‑78 (MQ=255)

                                   ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagc                                                         >  1:3556778‑M2/1‑78 (MQ=255)

                                    tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagcg                                                        >  1:4106296‑M2/1‑77 (MQ=255)

                                     cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagcgt                                                       <  1:315738‑M2/91‑16 (MQ=255)

                                     cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagcgt                                                       <  1:2594672‑M2/91‑16 (MQ=255)

                                       aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagcgttt                                                     >  1:1604356‑M2/1‑74 (MQ=255)

                                       aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGActttatatgaagcgttt                                                     >  1:1604279‑M2/1‑74 (MQ=255)

                                          gACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAt                                                  <  1:1783630/91‑1 (MQ=255)

                                           aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                 <  1:1543312/91‑1 (MQ=255)

                                           aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                 <  1:1116030/91‑1 (MQ=255)

                                             aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                               >  1:214492/1‑91 (MQ=255)

                                             aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                               >  1:391923/1‑91 (MQ=255)

                                             aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                               >  1:772322/1‑91 (MQ=255)

                                              aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                              >  1:3877590/1‑91 (MQ=255)

                                                aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                            >  1:1008042/1‑91 (MQ=255)

                                                aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                            <  1:832497/91‑1 (MQ=255)

                                                  aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                          >  1:1360415/1‑91 (MQ=255)

                                                   cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa                                         >  1:1635863/1‑91 (MQ=255)

                                                      tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                      >  1:1488715/1‑91 (MQ=255)

                                                       agagGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa                                     <  1:1000647/91‑1 (MQ=255)

                                                            aaTGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                <  1:1110322/91‑1 (MQ=255)

                                                            aaTGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                >  1:3156735/1‑91 (MQ=255)

                                                             aTGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTatat                               >  1:1403021/1‑91 (MQ=255)

                                                                  tGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                          >  1:3666262/1‑91 (MQ=255)

                                                                    taataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                        <  1:461202/91‑1 (MQ=255)

                                                                    taataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                        >  1:2593477/1‑91 (MQ=255)

                                                                     aataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                       <  1:1681081/91‑1 (MQ=255)

                                                                     aataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                       >  1:2631483/1‑91 (MQ=255)

                                                                     aataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                       >  1:2329324/1‑91 (MQ=255)

                                                                      ataaAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataata                      <  1:2477364/91‑1 (MQ=255)

                                                                        aaaaaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATaataat                    >  1:1685634/1‑91 (MQ=255)

                                                                         aaaaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                   <  1:2294665/91‑1 (MQ=255)

                                                                         aaaaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                   >  1:2934192/1‑91 (MQ=255)

                                                                          aaaCGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatt                  >  1:1605097‑M1/1‑17 (MQ=255)

                                                                          aaaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttt                  >  1:3521865/1‑91 (MQ=255)

                                                                           aaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt                 <  1:2102487/91‑1 (MQ=255)

                                                                           aaCGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt                 <  1:348403/91‑1 (MQ=255)

                                                                            aCGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttg                <  1:3564070‑M1/91‑77 (MQ=255)

                                                                            aCGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttg                <  1:316211‑M1/91‑77 (MQ=255)

                                                                            aCGCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttg                <  1:316231‑M1/91‑77 (MQ=255)

                                                                             cGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTc               >  1:341359/1‑91 (MQ=255)

                                                                              gCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa              >  1:3068256‑M1/1‑13 (MQ=255)

                                                                              gCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa              >  1:2909201‑M1/1‑13 (MQ=255)

                                                                              gCTTCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa              >  1:3148163‑M1/1‑13 (MQ=255)

                                                                              gCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt              >  1:3145424/1‑91 (MQ=255)

                                                                               cTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa             >  1:1331514/1‑91 (MQ=255)

                                                                               cTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa             <  1:1291624/91‑1 (MQ=255)

                                                                                ttCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaaca            <  1:2935695‑M1/91‑81 (MQ=255)

                                                                                ttCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt            >  1:1092923/1‑91 (MQ=255)

                                                                                ttCATATAAA‑GGTCGAGTCAATATATGATACAACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt            <  1:513368/91‑1 (MQ=255)

                                                                                 tCATATAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacat           <  1:2455290‑M1/91‑82 (MQ=255)

                                                                                  cATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt          >  1:179805/1‑91 (MQ=255)

                                                                                  cATATAAA‑GGTCGAGTCAATATATGATACGACTATATATGAAGCGTTTTATTTGCTATGTGCTAGTATATTTTATAATAATTTTTCTAttt          <  1:3687612/91‑1 (MQ=255)

                                                                                   atatAAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatca         <  1:28111‑M1/91‑84 (MQ=255)

                                                                                   atatAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtc         >  1:1709654/1‑91 (MQ=255)

                                                                                    tataAA‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcat        <  1:2481603‑M1/91‑85 (MQ=255)

                                                                                     ataAA‑GGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatt       <  1:634896‑M2/91‑64 (MQ=255)

                                                                                     ataAA‑GGTCGAGTCAAGATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtctc       <  1:1482340/91‑1 (MQ=255)

                                                                                      taAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct      >  1:2508732/1‑91 (MQ=255)

                                                                                       aaa‑GGTCGAGTCAATATATGATACGAcctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattt     <  1:1450391‑M2/91‑66 (MQ=255)

                                                                                       aaa‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt     <  1:968829/91‑1 (MQ=255)

                                                                                         a‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat   <  1:181443‑M1/91‑90 (MQ=255)

                                                                                         a‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat   <  1:247342‑M1/91‑90 (MQ=255)

                                                                                         a‑Gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat   <  1:954242‑M1/91‑90 (MQ=255)

                                                                                         a‑GGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat   <  1:2611569‑M2/91‑68 (MQ=255)

                                                                                         a‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc   >  1:172405/1‑91 (MQ=255)

                                                                                         a‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc   >  1:32609/1‑91 (MQ=255)

                                                                                         a‑GGTCGAGTCAATATATGATACGACGTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc   <  1:3854635/91‑1 (MQ=255)

                                                                                           gtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaatt  <  1:1461854‑M1/91‑91 (MQ=255)

GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA‑GGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCG  >  USA300TCH1516_ALE/1332859‑1333039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.