BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1332949	84 (0.850)	7 (0.090)	5/124	NT	8.1%	intergenic (+159/+63)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA
*	?	USA300TCH1516_ALE	= 1332971	94 (1.230)	7 (0.090)	5/124	NT	8.1%	intergenic (+181/+41)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 148 total aligned reads displayed.

CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061

cAATTAAATGAGGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGa                                                                                            <  1:3762556/91‑1 (MQ=255)

 aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc                                                                                           <  1:1461854‑M2/91‑2 (MQ=255)

  aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAct                                                                                          <  1:954242‑M2/91‑3 (MQ=255)

  aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAct                                                                                          <  1:247342‑M2/91‑3 (MQ=255)

   ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActt                                                                                         >  1:2471957‑M2/1‑88 (MQ=255)

   ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAACGTCGAGTCAATATATGATACGActt                                                                                         <  1:3863654‑M2/91‑4 (MQ=255)

       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  1:2481603‑M2/91‑8 (MQ=255)

        tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                    <  1:28111‑M2/91‑9 (MQ=255)

          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  1:2455290‑M2/91‑11 (MQ=255)

          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  1:4114316‑M2/91‑11 (MQ=255)

           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 <  1:2935695‑M2/91‑12 (MQ=255)

           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 <  1:686710‑M2/91‑12 (MQ=255)

             ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagc                                                                               >  1:3068256‑M2/1‑78 (MQ=255)

             ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagc                                                                               >  1:3148163‑M2/1‑78 (MQ=255)

              tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg                                                                              >  1:4106296‑M2/1‑77 (MQ=255)

               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             <  1:316211‑M2/91‑16 (MQ=255)

               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             <  1:3564070‑M2/91‑16 (MQ=255)

               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             <  1:316231‑M2/91‑16 (MQ=255)

               cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt                                                                             <  1:2594672‑M2/91‑16 (MQ=255)

                 aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttt                                                                           >  1:1604279‑M2/1‑74 (MQ=255)

                 aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttt                                                                           >  1:1604356‑M2/1‑74 (MQ=255)

                    gACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAt                                                                        <  1:1783630/91‑1 (MQ=255)

                     aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                                       <  1:1116030/91‑1 (MQ=255)

                       aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                                                     >  1:214492/1‑91 (MQ=255)

                       aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                                                     >  1:391923/1‑91 (MQ=255)

                       aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg                                                                     >  1:772322/1‑91 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                                                    >  1:3877590/1‑91 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                                                    >  1:1796305/1‑91 (MQ=255)

                         gATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCt                                                                   >  1:3128478/1‑91 (MQ=255)

                          aTACAATAGGGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                                                  <  1:3965507/91‑1 (MQ=255)

                          aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                                                  >  1:1008042/1‑91 (MQ=255)

                          aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTCGCTa                                                                  >  1:3452217/1‑91 (MQ=255)

                            aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                                                >  1:1360415/1‑91 (MQ=255)

                            aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                                                <  1:299538/91‑1 (MQ=255)

                             cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa                                                               >  1:1635863/1‑91 (MQ=255)

                               aTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGc                                                             >  1:3898597/1‑91 (MQ=255)

                                tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAGGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                            >  1:1488668/1‑91 (MQ=255)

                                tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                            >  1:1488715/1‑91 (MQ=255)

                                 agagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa                                                           <  1:1000647/91‑1 (MQ=255)

                                      aaTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                                      >  1:3156735/1‑91 (MQ=255)

                                      aaTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                                      <  1:1110322/91‑1 (MQ=255)

                                       aTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTatat                                                     >  1:1403021/1‑91 (MQ=255)

                                          tttGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtttt                                                  >  1:1412208/1‑91 (MQ=255)

                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                >  1:3666262/1‑91 (MQ=255)

                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  1:2593477/1‑91 (MQ=255)

                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             <  1:1681068/91‑1 (MQ=255)

                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             <  1:192124/91‑1 (MQ=255)

                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             <  1:1681081/91‑1 (MQ=255)

                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             >  1:2631524/1‑91 (MQ=255)

                                               aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat                                             >  1:2631483/1‑91 (MQ=255)

                                                ataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataata                                            <  1:2477364/91‑1 (MQ=255)

                                                  aaaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATaataat                                          >  1:1685634/1‑91 (MQ=255)

                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         >  1:2934192/1‑91 (MQ=255)

                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         <  1:2622620/91‑1 (MQ=255)

                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         <  1:2297045/91‑1 (MQ=255)

                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         <  1:2294665/91‑1 (MQ=255)

                                                    aaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttt                                        >  1:3522151/1‑91 (MQ=255)

                                                    aaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttt                                        >  1:3521865/1‑91 (MQ=255)

                                                     aaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt                                       <  1:2102487/91‑1 (MQ=255)

                                                        gCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt                                    >  1:3145424/1‑91 (MQ=255)

                                                         cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   >  1:2907807/1‑91 (MQ=255)

                                                         cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   <  1:1291624/91‑1 (MQ=255)

                                                         cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   >  1:1331514/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:84299/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:1092923/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:619824/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:146173/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACAACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  <  1:513368/91‑1 (MQ=255)

                                                            cATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt                                >  1:179805/1‑91 (MQ=255)

                                                            cATATAAAGGTCGAGTCAATATATGATACGACTATATATGAAGCGTTTTATTTGCTATGTGCTAGTATATTTTATAATAATTTTTCTAttt                                <  1:3687612/91‑1 (MQ=255)

                                                             atatAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtc                               >  1:1709654/1‑91 (MQ=255)

                                                               ataAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatt                             <  1:634895‑M2/91‑64 (MQ=255)

                                                                taAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                            >  1:2508732/1‑91 (MQ=255)

                                                                 aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta                           <  1:420698‑M2/91‑66 (MQ=255)

                                                                 aaaGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt                           <  1:968829/91‑1 (MQ=255)

                                                                   aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         >  1:171973/1‑91 (MQ=255)

                                                                   aGGTCGAGTCAATATATGATACGACGTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         <  1:3854635/91‑1 (MQ=255)

                                                                    ggTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaatt                        <  1:3464970‑M2/91‑69 (MQ=255)

                                                                     gTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGa                       <  1:644368/91‑1 (MQ=255)

                                                                      tCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAt                      >  1:1010669/1‑91 (MQ=255)

                                                                       cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt                     >  1:1850922/1‑91 (MQ=255)

                                                                        gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                    <  1:3410954/91‑1 (MQ=255)

                                                                        gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                    <  1:4056009/91‑1 (MQ=255)

                                                                         aGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTg                   <  1:1289711/91‑1 (MQ=255)

                                                                          gTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTATCTTTCGATTTGa                  >  1:4146155/1‑91 (MQ=255)

                                                                           tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGaa                 >  1:1243827/1‑91 (MQ=255)

                                                                             aaTATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACa               <  1:1219018/91‑1 (MQ=255)

                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              <  1:4085417/91‑1 (MQ=255)

                                                                               tatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAgg             <  1:3377414/91‑1 (MQ=255)

                                                                                atatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGt            <  1:1755281/91‑1 (MQ=255)

                                                                                atatGATACGACTTTATATGAAGCGTTTTACTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGt            <  1:530821/91‑1 (MQ=255)

                                                                                    gATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttt        <  1:1535369/91‑1 (MQ=255)

                                                                                     aTACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttt       <  1:1617671/91‑1 (MQ=255)

                                                                                     aTACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttt       <  1:704797/91‑1 (MQ=255)

                                                                                      tACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttttt      >  1:884639/1‑91 (MQ=255)

                                                                                       aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt     <  1:4032703/91‑1 (MQ=255)

                                                                                       aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt     <  1:1952490/91‑1 (MQ=255)

                                                                                       aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt     <  1:1952554/91‑1 (MQ=255)

                                                                                        cGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTg    <  1:1540372/91‑1 (MQ=255)

                                                                                          aCTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAg  >  1:1038988/1‑91 (MQ=255)

CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.