| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1336102 = | 102 (1.040) | 9 (0.110) | 5/138 | NT | 9.4% | intergenic (+7/‑236) | mgl/glnR | L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR |
| ? | USA300TCH1516_ALE | 1336142 = | 86 (1.010) | intergenic (+47/‑196) | mgl/glnR | L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR | |||||
CAATCTACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1336200‑1336102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAG > USA300TCH1516_ALE/1336142‑1336231 CAATCTACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGG < 1:2218152/91‑1 ATCTACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTG < 1:2823209/91‑1 CTACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAA > 1:3919606/1‑91 ACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAAT < 1:1005432/91‑1 ACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAAT < 1:1301443/91‑1 ACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAAT < 1:1004734/91‑1 CAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATT > 1:4085382/1‑91 CAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATT > 1:945264/1‑91 CAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATT < 1:3472238/91‑1 AGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATTT < 1:2116410/91‑1 AGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATTT < 1:1072992/91‑1 TTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGA > 1:3518382/1‑91 TTCACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAG > 1:3346278/1‑91 TCACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGA > 1:2447556/1‑91 CACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAT > 1:2864344/1‑91 CACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAT > 1:1155111/1‑91 CACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAT > 1:1644808/1‑91 CACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAT > 1:2864611/1‑91 CACCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGAT > 1:2116801/1‑91 CCCAAAACACATTATCATTTAGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTG > 1:195795/1‑91 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGGAGTC < 1:3280595/91‑1 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC > 1:2795964/1‑91 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC < 1:3107161/91‑1 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC > 1:2450564/1‑91 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC > 1:2450563/1‑91 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC < 1:3882511/91‑1 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC < 1:2349257/91‑1 GGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTC < 1:2038664/91‑1 GTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGA > 1:2663577/1‑91 TGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAA < 1:961648/91‑1 TGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAA < 1:961863/91‑1 TGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAA > 1:2687537/1‑91 TGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAA > 1:2129420/1‑91 AAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAAT < 1:4025471/91‑1 TTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAG > 1:3908044/1‑91 CAATCTACAGCTAAAATATTTTTTCAATTTTTAAAAATAATCTGATAAATCTCCGCAAAAAATTTCACCCAAAACACATTATCATTTAGGGTGAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1336200‑1336102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAG > USA300TCH1516_ALE/1336142‑1336231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |