BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1336102 =	102 (1.040)	9 (0.110)	5/138	NT	9.4%	intergenic (+7/‑236)	mgl/glnR	L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR
*	?	USA300TCH1516_ALE	1336142 =	86 (1.010)	9 (0.110)	5/138	NT	9.4%	intergenic (+47/‑196)	mgl/glnR	L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR

Only 100 of 140 total aligned reads displayed.

GACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAG  >  USA300TCH1516_ALE/1336053‑1336231

gACACGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAAttttt                                                                                           >  1:3276004/1‑91 (MQ=255)

gACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAAttttt                                                                                           <  1:493501/91‑1 (MQ=255)

gACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAAttttt                                                                                           <  1:2419039/91‑1 (MQ=255)

 aCAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAAtttttt                                                                                          >  1:1578189/1‑91 (MQ=255)

  cAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTg                                                                                         <  1:4062678/91‑1 (MQ=255)

    agagCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCg                                                                                       >  1:2767/1‑91 (MQ=255)

     gagCTGTTAATCAGTTGAAAGAACAGGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCgg                                                                                      <  1:1537491/91‑1 (MQ=255)

     gagCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCgg                                                                                      <  1:3354351/91‑1 (MQ=255)

     gagCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCgg                                                                                      <  1:1537508/91‑1 (MQ=255)

      agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                                     >  1:2111351/1‑91 (MQ=255)

      agCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGga                                                                                     >  1:2691935/1‑91 (MQ=255)

       gCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGgag                                                                                    >  1:382417/1‑91 (MQ=255)

       gCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGgag                                                                                    >  1:383446/1‑91 (MQ=255)

         tGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGAt                                                                                  <  1:3271144/91‑1 (MQ=255)

          gTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGAtt                                                                                 >  1:1529712/1‑91 (MQ=255)

          gTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGAtt                                                                                 >  1:1589746/1‑91 (MQ=255)

            tAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTa                                                                               >  1:894418/1‑91 (MQ=255)

                  gTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTGTCAGat                                                                         >  1:1887657/1‑91 (MQ=255)

                  gTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTGTCAGat                                                                         >  1:1887505/1‑91 (MQ=255)

                  gTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGat                                                                         >  1:3891890/1‑91 (MQ=255)

                  gTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGat                                                                         >  1:3891625/1‑91 (MQ=255)

                   ttGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatt                                                                        <  1:1287778/91‑1 (MQ=255)

                   ttGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatt                                                                        <  1:1287737/91‑1 (MQ=255)

                    tGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatta                                                                       >  1:2727849/1‑91 (MQ=255)

                    tGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGatta                                                                       >  1:380826/1‑91 (MQ=255)

                    tGAAAGAACAAGGACATATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTCGGTGAAATTTTTTGCGGAGATTTATCAGatta                                                                       >  1:3536369/1‑91 (MQ=255)

                       aaGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTAttt                                                                    >  1:3120651/1‑91 (MQ=255)

                          aaCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTa                                                                 <  1:1788395/91‑1 (MQ=255)

                          aaCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTa                                                                 <  1:2580058/91‑1 (MQ=255)

                           aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                                >  1:2398255/1‑91 (MQ=255)

                           aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                                >  1:2825220/1‑91 (MQ=255)

                           aCAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaa                                                                >  1:3622452/1‑91 (MQ=255)

                            cAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaa                                                               >  1:1224765/1‑91 (MQ=255)

                            cAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaa                                                               >  1:2641037/1‑91 (MQ=255)

                            cAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaa                                                               <  1:229070/91‑1 (MQ=255)

                             aaGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaa                                                              <  1:2406676/91‑1 (MQ=255)

                             aaGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaa                                                              >  1:2681232/1‑91 (MQ=255)

                             aaGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaa                                                              >  1:2630066/1‑91 (MQ=255)

                              tctgataaatctccgcaaaAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTaaaaa                                                             >  1:3518382‑M1/20‑91 (MQ=255)

                               ggACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAAt                                                            >  1:1857816/1‑91 (MQ=255)

                                gACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAAtt                                                           >  1:2737599/1‑91 (MQ=255)

                                gACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAAtt                                                           >  1:586087/1‑91 (MQ=255)

                                   ttATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aa                                                       <  1:1125017/91‑1 (MQ=255)

                                   ttATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aa                                                       <  1:2157740/91‑1 (MQ=255)

                                    tatataATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aaa                                                      >  1:1685397/1‑91 (MQ=255)

                                     atataATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aaaa                                                     <  1:3026580/91‑1 (MQ=255)

                                      tataATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aaaaa                                                    <  1:762968/91‑1 (MQ=255)

                                      tataATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑aaaaa                                                    >  1:1002859/1‑91 (MQ=255)

                                         aataGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAata                                                 >  1:1418131/1‑91 (MQ=255)

                                            aGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATAttt                                              >  1:185745/1‑91 (MQ=255)

                                             gATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATAtttt                                             <  1:2902035/91‑1 (MQ=255)

                                                 AAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCt                                         <  1:2116410‑M1/91‑1 (MQ=255)

                                                  AATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTg                                        >  1:4085382‑M1/1‑91 (MQ=255)

                                                  AATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTg                                        <  1:3472238‑M1/91‑1 (MQ=255)

                                                   ATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGt                                       <  1:1004734‑M1/91‑1 (MQ=255)

                                                   ATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGt                                       <  1:1301443‑M1/91‑1 (MQ=255)

                                                   ATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGt                                       <  1:1005432‑M1/91‑1 (MQ=255)

                                                     ttcacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAg                                     >  1:3346278‑M2/37‑91 (MQ=255)

                                                     TTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAg                                     >  1:3919606‑M1/1‑91 (MQ=255)

                                                      tcacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGa                                    >  1:2447556‑M2/36‑91 (MQ=255)

                                                       cacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   >  1:1155111‑M2/35‑91 (MQ=255)

                                                       cacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   >  1:1644808‑M2/35‑91 (MQ=255)

                                                       cacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   >  1:2116801‑M2/35‑91 (MQ=255)

                                                       cacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   >  1:2864344‑M2/35‑91 (MQ=255)

                                                       cacccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   >  1:2864611‑M2/35‑91 (MQ=255)

                                                       CACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGAt                                   <  1:2823209‑M1/91‑1 (MQ=255)

                                                         cccaaaacacattatcatttagggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTg                                 >  1:195795‑M2/33‑91 (MQ=255)

                                                         CCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTg                                 <  1:2218152‑M1/91‑1 (MQ=255)

                                                            tAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGttt                              >  1:109013/1‑91 (MQ=255)

                                                            tAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGttt                              <  1:583284/91‑1 (MQ=255)

                                                             aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAGAATATTTTAGCTGTAGATTGtttt                             <  1:2304076/91‑1 (MQ=255)

                                                             aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGtttt                             <  1:4044687/91‑1 (MQ=255)

                                                             aaaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGtttt                             >  1:1198367/1‑91 (MQ=255)

                                                              aaTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTa                            <  1:835617/91‑1 (MQ=255)

                                                               aTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTAt                           <  1:2894070/91‑1 (MQ=255)

                                                               aTGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTAt                           >  1:1183522/1‑91 (MQ=255)

                                                                   tAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCg                       >  1:3556314/1‑91 (MQ=255)

                                                                   tAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCg                       >  1:1148076/1‑91 (MQ=255)

                                                                    aaTGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGt                      <  1:828743/91‑1 (MQ=255)

                                                                     aTGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGtt                     <  1:3711320/91‑1 (MQ=255)

                                                                      tgtgTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGttt                    >  1:2772058/1‑91 (MQ=255)

                                                                        tgtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTGAAAAAAATATTTTAGCTGTAGATTGTTTTATGTCGtttt                   <  1:2468828/91‑1 (MQ=255)

                                                                         gtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAg                 >  1:2011437/1‑91 (MQ=255)

                                                                         gtTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAg                 >  1:282661/1‑91 (MQ=255)

                                                                          ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa                >  1:539532/1‑91 (MQ=255)

                                                                          ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa                >  1:539422/1‑91 (MQ=255)

                                                                          ttttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGa                >  1:3448003/1‑91 (MQ=255)

                                                                           tttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGaa               >  1:1414863/1‑91 (MQ=255)

                                                                           tttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGaa               >  1:2685839/1‑91 (MQ=255)

                                                                            ttGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAg              >  1:2415097/1‑91 (MQ=255)

                                                                             tGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGt             >  1:960482/1‑91 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGGAGTc            <  1:3280595‑M2/80‑1 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTc            <  1:2349257‑M2/80‑1 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTc            <  1:2038664‑M2/80‑1 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTc            <  1:3882511‑M2/80‑1 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTc            >  1:2450564‑M2/12‑91 (MQ=255)

                                                                              gggtgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTc            <  1:3107161‑M2/80‑1 (MQ=255)

                                                                                 tgaaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGaa         <  1:961648‑M2/83‑1 (MQ=255)

                                                                                   aaatttTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAAt       <  1:4025471‑M2/85‑1 (MQ=255)

                                                                                        tTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAg  >  1:3908044‑M2/2‑91 (MQ=255)

GACAAGAGCTGTTAATCAGTTGAAAGAACAAGGACTTATATAATAGATTAAATTTCACCCTAAATGATAATGTGTTTTGGGTGAAATTTTTTGCGGAGATTTATCAGATTATTTTTAAAAATTG‑AAAAAATATTTTAGCTGTAGATTGTTTTATGTCGTTTTAGAAGTCGAAATCGCAG  >  USA300TCH1516_ALE/1336053‑1336231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.