| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1341822 = | 165 (1.680) | 12 (0.130) | 8/148 | NT | 7.4% | intergenic (+230/‑282) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1341877 = | 147 (1.620) | intergenic (+285/‑227) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein | |||||
TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 1:2403157/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 1:1969766/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC < 1:1076413/91‑1 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC < 1:764352/91‑1 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:3109291/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:1957287/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:1958300/1‑91 TCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCAT > 1:3071244/1‑91 TCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCAT < 1:3254121/91‑1 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:2616946/1‑91 ATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT > 1:1429828/1‑91 ATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT < 1:3196735/91‑1 AAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAA > 1:623943/1‑91 AATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATG > 1:1314488/1‑91 GCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAC > 1:1800506/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 1:2418535/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 1:2071560/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 1:1369885/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 1:1368277/1‑91 CCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATAT > 1:941575/1‑91 CCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATAT > 1:789268/1‑91 CCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATAT > 1:415411/1‑91 TCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAG > 1:105846/1‑91 CGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGT > 1:3903894/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG > 1:566361/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG > 1:3425890/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG < 1:752553/91‑1 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGT < 1:2606734/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:3549297/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > 1:2925747/1‑91 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:80058/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:829364/91‑1 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |