BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1341822 =	165 (1.680)	12 (0.130)	8/148	NT	7.4%	intergenic (+230/‑282)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1341877 =	147 (1.620)	12 (0.130)	8/148	NT	7.4%	intergenic (+285/‑227)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein

Only 100 of 198 total aligned reads displayed.

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

ttatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt                                                                                            >  1:623943‑M1/36‑91 (MQ=255)

   aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt                                                                                         <  1:51048/91‑1 (MQ=255)

      gATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaa                                                                                      <  1:2890009/91‑1 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGCCTTTGAAGGGGGCATTTTCATTaaa                                                                                     >  1:3870314/1‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  1:2287582/1‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  1:1247276/1‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     <  1:798364/91‑1 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     <  1:3617623/91‑1 (MQ=255)

         aaaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAtt                                                                                   <  1:2465515/91‑1 (MQ=255)

         aaaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAtt                                                                                   >  1:1468623/1‑91 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  1:714900/91‑1 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  1:591274/91‑1 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  1:2681970/91‑1 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  1:1587601/91‑1 (MQ=255)

             aaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTta                                                                               <  1:395431/91‑1 (MQ=255)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             >  1:3305389/1‑91 (MQ=255)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGATTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             >  1:3506940/1‑91 (MQ=255)

                aTTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAg                                                                            >  1:1022629/1‑91 (MQ=255)

                 ttGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGc                                                                           <  1:102763/91‑1 (MQ=255)

                  tGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCt                                                                          >  1:2452678/1‑91 (MQ=255)

                  tGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCt                                                                          <  1:789135/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  1:2238810/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         >  1:3799538/1‑91 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  1:2146939/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  1:1335707/91‑1 (MQ=255)

                    gAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttt                                                                        <  1:1680241/91‑1 (MQ=255)

                     aaTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtttt                                                                       <  1:3036672/91‑1 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta                                                                     >  1:531919/1‑91 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta                                                                     <  1:2136316/91‑1 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta                                                                     <  1:3844397/91‑1 (MQ=255)

                         gATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTtata                                                                   >  1:80172/1‑91 (MQ=255)

                          aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat                                                                  >  1:3719646/1‑91 (MQ=255)

                           tCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAtt                                                                 <  1:4050969/91‑1 (MQ=255)

                            cGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAttt                                                                >  1:939576/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               <  1:1279920/91‑1 (MQ=255)

                              tCTTGGAATGCTCCCTTCAAAGTTTGCATTTTTTCAATGTCGACTTCGAAGGGTGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  1:3851633/91‑1 (MQ=37)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  1:953864/91‑1 (MQ=255)

                                  gAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATaa                                                          >  1:1856592/1‑91 (MQ=255)

                                   AAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAAt                                                         >  1:1429828‑M1/1‑91 (MQ=255)

                                    AATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATg                                                        >  1:2616946‑M1/1‑91 (MQ=255)

                                     ATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGa                                                       <  1:3254121‑M1/91‑1 (MQ=255)

                                     ATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGa                                                       >  1:3071244‑M1/1‑91 (MQ=255)

                                       gcccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     >  1:1800506‑M2/52‑91 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     <  1:1076413‑M1/91‑1 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     >  1:1957287‑M1/1‑91 (MQ=255)

                                        cccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  1:2418535‑M2/51‑91 (MQ=255)

                                        CTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  1:2403157‑M1/1‑91 (MQ=255)

                                        CTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  1:1969766‑M1/1‑91 (MQ=255)

                                         tCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACat                                                   <  1:3502973/91‑1 (MQ=255)

                                         tCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGCATAATGAACat                                                   >  1:3760523/1‑91 (MQ=255)

                                         ccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACat                                                   >  1:2071560‑M2/50‑91 (MQ=255)

                                         ccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACat                                                   >  1:1369885‑M2/50‑91 (MQ=255)

                                          cccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACata                                                  <  1:2967980/91‑1 (MQ=255)

                                           ccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACatat                                                 <  1:1030594/91‑1 (MQ=255)

                                           ccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACatat                                                 >  1:1327355/1‑91 (MQ=255)

                                           ccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACatat                                                 <  1:1341573/91‑1 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  1:420327/91‑1 (MQ=255)

                                               cgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGt                                             >  1:3903894‑M2/44‑91 (MQ=255)

                                               cAAAGTTTTCATTTTATCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATCGCTTTTTATATTTGTATAATGAACATATAAGt                                             >  1:3537946/1‑91 (MQ=255)

                                                aaaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGtt                                            <  1:2930557/91‑1 (MQ=255)

                                                  aGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTa                                          <  1:1872663/91‑1 (MQ=255)

                                                     tttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaaga                                       <  1:3315113/91‑1 (MQ=255)

                                                     tttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaaga                                       <  1:1277528/91‑1 (MQ=255)

                                                      ttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaa                                      >  1:1357955/1‑91 (MQ=255)

                                                      ttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaa                                      >  1:2656688/1‑91 (MQ=255)

                                                      ttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaa                                      >  1:297375/1‑91 (MQ=255)

                                                       tCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaag                                     >  1:400590/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   >  1:2295971/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   <  1:89651/91‑1 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   <  1:1659226/91‑1 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   <  1:2940994/91‑1 (MQ=255)

                                                          ttttttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAACTTTAAGAAGGTg                                  <  1:3180784/91‑1 (MQ=255)

                                                              ttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAg                              <  1:2356994/91‑1 (MQ=255)

                                                               tCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGt                             <  1:2994245/91‑1 (MQ=255)

                                                                 aaTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGa                           >  1:3151464/1‑91 (MQ=255)

                                                                  aTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATTAGTGTAAGAAGGTGCGAGTGaa                          >  1:3822909/1‑91 (MQ=255)

                                                                  aTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGaa                          <  1:1297460/91‑1 (MQ=255)

                                                                   tGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAg                         <  1:448168/91‑1 (MQ=255)

                                                                    gTCGACTTCGAAGGGGGCATTTTCATTAAATTTTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGCAGGTGCGAGTGAAgg                        <  1:3533749/91‑1 (MQ=255)

                                                                    gTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAgg                        >  1:1041431/1‑91 (MQ=255)

                                                                    gTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAgg                        >  1:4081901/1‑91 (MQ=255)

                                                                     tCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGa                       <  1:2819716/91‑1 (MQ=255)

                                                                      cGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGaa                      <  1:144701/91‑1 (MQ=255)

                                                                      cGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGaa                      >  1:3376890/1‑91 (MQ=255)

                                                                         cTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATa                   <  1:684101/91‑1 (MQ=255)

                                                                         cTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATa                   <  1:1687534/91‑1 (MQ=255)

                                                                            cGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATCATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaa                >  1:1486813/1‑91 (MQ=255)

                                                                            cGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaa                <  1:4102935/91‑1 (MQ=255)

                                                                             gAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaaa               >  1:818384/1‑91 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            >  1:2752396/1‑91 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            <  1:921269/91‑1 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            >  1:2804652/1‑91 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            <  1:1683050/91‑1 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            >  1:1526322/1‑91 (MQ=255)

                                                                                gggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGc            >  1:3983255/1‑91 (MQ=255)

                                                                                 ggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCt           >  1:2317076/1‑91 (MQ=255)

                                                                                       tttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATg     <  1:752553‑M2/88‑1 (MQ=255)

                                                                                       tttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATg     >  1:3425890‑M2/4‑91 (MQ=255)

                                                                                         tTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTa   <  1:3549297‑M2/90‑1 (MQ=255)

                                                                                         tTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTa   <  1:829364‑M2/90‑1 (MQ=255)

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.