| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1347832 | 155 (1.580) | 9 (0.100) | 7/148 | NT | 6.1% | intergenic (+14/‑44) | USA300HOU_RS06695/cls_1 | hypothetical protein/Cardiolipin synthase |
| ? | USA300TCH1516_ALE | = 1347851 | 134 (1.470) | intergenic (+33/‑25) | USA300HOU_RS06695/cls_1 | hypothetical protein/Cardiolipin synthase | |||||
TATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1347737‑1347832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < USA300TCH1516_ALE/1347851‑1347762 TATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTG > 1:2706884/1‑91 ATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGA > 1:116998/1‑91 ATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGA < 1:1218021/91‑1 ATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGA > 1:1990382/1‑91 TAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAA < 1:361119/91‑1 AAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAG > 1:471909/1‑91 AAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGG > 1:1536495/1‑91 AAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGG > 1:3476745/1‑91 AAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACA < 1:2968733/91‑1 AACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTT < 1:1410264/91‑1 ACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTG < 1:3832824/91‑1 ACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTG < 1:3092669/91‑1 ACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTG < 1:1158852/91‑1 CAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTGCACCTTT < 1:3606253/91‑1 GAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCAT < 1:269533/91‑1 AAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTA < 1:2713883/91‑1 AGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTAT < 1:2554063/91‑1 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT < 1:1027102/91‑1 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT > 1:398687/1‑91 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT > 1:673269/1‑91 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT > 1:673374/1‑91 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT < 1:1026614/91‑1 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT > 1:2707548/1‑91 GAAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTT > 1:1173886/1‑91 AAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTG > 1:3006025/1‑91 AAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTG < 1:1477870/91‑1 AAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTG > 1:1829865/1‑91 AAAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTGATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTG < 1:4133621/91‑1 AAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGG > 1:2759804/1‑91 AAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGG > 1:490947/1‑91 AAGGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGG > 1:1671115/1‑91 GGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGA > 1:888265/1‑91 GGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGA < 1:1870294/91‑1 GGCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGA > 1:2846206/1‑91 GCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < 1:2186202/91‑1 GCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < 1:2187011/91‑1 GCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < 1:2717325/91‑1 GCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < 1:774217/91‑1 TATTAAAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1347737‑1347832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggCACAAAAAAACATTTTGCACCTTTCACGTCATATTATTTATTCACAGATAAAGTTAAAATTGCATTGAATTCTTCTTCATTATTTGGGAA < USA300TCH1516_ALE/1347851‑1347762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |