BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1347832	155 (1.580)	9 (0.100)	7/148	NT	6.1%	intergenic (+14/‑44)	USA300HOU_RS06695/cls_1	hypothetical protein/Cardiolipin synthase
*	?	USA300TCH1516_ALE	= 1347851	134 (1.470)	9 (0.100)	7/148	NT	6.1%	intergenic (+33/‑25)	USA300HOU_RS06695/cls_1	hypothetical protein/Cardiolipin synthase

Only 100 of 227 total aligned reads displayed.

AAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTAT  >  USA300TCH1516_ALE/1347742‑1347922

aaGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGG                                                                                            >  1:3476745‑M1/1‑91 (MQ=255)

  gAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTg                                                                                          >  1:167897/1‑91 (MQ=255)

    aaTAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCa                                                                                        <  1:2426351/91‑1 (MQ=255)

    aaTAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCa                                                                                        >  1:2639141/1‑91 (MQ=255)

      tAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCaaa                                                                                      >  1:1308908/1‑91 (MQ=255)

      tAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCaaa                                                                                      <  1:77091/91‑1 (MQ=255)

        gaagaaAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAAt                                                                                    >  1:3073884/1‑91 (MQ=255)

         aagaaagaACATTCCCAAATAATGAAGAAGAGTTCAATGCAATTGTAACTTTAGCTGGGAATAAATAATATGACGTGAAAGGTGCAAAATg                                                                                   <  1:3307283/91‑1 (MQ=255)

         aagaaagaACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATg                                                                                   >  1:885812/1‑91 (MQ=255)

         aagaaagaACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATg                                                                                   <  1:2201426/91‑1 (MQ=255)

           gaaagaaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGtt                                                                                 <  1:2495352/91‑1 (MQ=255)

           gaaagaaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGtt                                                                                 <  1:3559806/91‑1 (MQ=255)

            aaagaaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGttt                                                                                >  1:3191666/1‑91 (MQ=255)

               gaaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGtttttt                                                                             >  1:3094412/1‑91 (MQ=255)

               gaaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGtttttt                                                                             <  1:2995045/91‑1 (MQ=255)

                aaCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGcacaaaaaaacatttt                                                                            <  1:1410264‑M1/91‑17 (MQ=255)

                aaCATGCCCAAATAATGAAGAAGAACTCAATGCAATTTTGACTTTATCTGTGAGTAAATAATATGACGTGAAAGGTGCAAAATGttttttt                                                                            <  1:3863955/91‑1 (MQ=255)

                 aCATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTtg                                                                           >  1:2928990/1‑91 (MQ=255)

                  cATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTtgt                                                                          >  1:3065948/1‑91 (MQ=255)

                   aTTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTtgtg                                                                         <  1:2609812/91‑1 (MQ=255)

                    ttCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGc                                                                        <  1:2187011‑M2/91‑2 (MQ=255)

                    ttCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGc                                                                        <  1:2717325‑M2/91‑2 (MQ=255)

                     tCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcc                                                                       <  1:1870294‑M2/91‑3 (MQ=255)

                     tCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcc                                                                       >  1:2846206‑M2/1‑89 (MQ=255)

                       ccAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctt                                                                     >  1:1671115‑M2/1‑87 (MQ=255)

                        cAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGcacaaaaaaacattttgcaccttt                                                                    <  1:3606253‑M1/91‑25 (MQ=255)

                        cAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGccttt                                                                    <  1:1477870‑M2/91‑6 (MQ=255)

                         aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                   >  1:1173886‑M2/1‑85 (MQ=255)

                          aataatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCctttct                                                                  >  1:482447/1‑91 (MQ=255)

                          aataatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCctttct                                                                  <  1:1318604/91‑1 (MQ=255)

                             aatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTta                                                               <  1:2441348/91‑1 (MQ=255)

                             aatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTta                                                               <  1:2441968/91‑1 (MQ=255)

                              atGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTtat                                                              <  1:3919138/91‑1 (MQ=255)

                                 aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                           >  1:355244/1‑91 (MQ=255)

                                 aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                           >  1:13719/1‑91 (MQ=255)

                                   gaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGgag                                                         <  1:2678710/91‑1 (MQ=255)

                                    aagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGcacaaaaaaacattttgcacctttcacgtcatatta                                                        <  1:2713883‑M1/91‑37 (MQ=255)

                                     agaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGcacaaaaaaacattttgcacctttcacgtcatattat                                                       <  1:2554063‑M1/91‑38 (MQ=255)

                                     agaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaa                                                       <  1:2143089/91‑1 (MQ=255)

                                      gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaaa                                                      >  1:1050159/1‑91 (MQ=255)

                                      gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaaa                                                      >  1:1527123/1‑91 (MQ=255)

                                      gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCCTTCTTTATAGGAGaaa                                                      >  1:1872113/1‑91 (MQ=255)

                                      gaaTTCAATGCAATTTTAACTTTATCTGTGAAGAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTCTCTTTATAGGAGaaa                                                      <  1:3535911/91‑1 (MQ=255)

                                         ttCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGa                                                   >  1:3674230/1‑91 (MQ=255)

                                          tCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAc                                                  >  1:1886031/1‑91 (MQ=255)

                                          tCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAc                                                  >  1:940354/1‑91 (MQ=255)

                                             aTGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTAt                                               >  1:2282133/1‑91 (MQ=255)

                                               gCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGc                                             <  1:1817945/91‑1 (MQ=255)

                                                  aTTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAt                                          >  1:1834206/1‑91 (MQ=255)

                                                   ttttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAtt                                         <  1:962552/91‑1 (MQ=255)

                                                   ttttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAtt                                         <  1:953664/91‑1 (MQ=255)

                                                    tttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAttt                                        <  1:2511895/91‑1 (MQ=255)

                                                     ttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAGTATGCGATTTa                                       >  1:3769292/1‑91 (MQ=255)

                                                     ttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTa                                       <  1:2475416/91‑1 (MQ=255)

                                                      tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTAc                                      <  1:2766430/91‑1 (MQ=255)

                                                      tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTAc                                      <  1:2012863/91‑1 (MQ=255)

                                                      tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTAc                                      <  1:2370514/91‑1 (MQ=255)

                                                      tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTCTTTTTGTGCCTTTCTTTATAGGAGAAAAGTCTATGCGATTTAc                                      >  1:4149543/1‑91 (MQ=255)

                                                       aaCTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACa                                     <  1:2585138/91‑1 (MQ=255)

                                                         cTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACAtt                                   <  1:694262/91‑1 (MQ=255)

                                                             aTCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCa                               <  1:832108/91‑1 (MQ=255)

                                                              tCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCaa                              >  1:2238668/1‑91 (MQ=255)

                                                                  tgAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGa                          <  1:791237/91‑1 (MQ=255)

                                                                  tgAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGa                          >  1:530685/1‑91 (MQ=255)

                                                                   gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                         >  1:3404084/1‑91 (MQ=255)

                                                                   gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                         >  1:1771806/1‑91 (MQ=255)

                                                                   gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                         <  1:1687176/91‑1 (MQ=255)

                                                                     ataaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAttt                       >  1:1646380/1‑91 (MQ=255)

                                                                      taaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTa                      >  1:1710022/1‑91 (MQ=255)

                                                                       aaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAg                     <  1:50410/91‑1 (MQ=255)

                                                                       aaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAg                     >  1:609875/1‑91 (MQ=255)

                                                                          taataTGCCGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGaa                  <  1:605624/91‑1 (MQ=255)

                                                                           aataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAAc                 >  1:1470724/1‑91 (MQ=255)

                                                                           aataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAAc                 >  1:2022651/1‑91 (MQ=255)

                                                                             tatGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGt               >  1:1390264/1‑91 (MQ=255)

                                                                             tatGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGt               <  1:3630249/91‑1 (MQ=255)

                                                                             tatGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGt               <  1:4093876/91‑1 (MQ=255)

                                                                              atGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttc              <  1:269533‑M2/91‑60 (MQ=255)

                                                                              atGACGTGAAAGGTGCAAAATGTTTTTTCGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGtt              <  1:457631/91‑1 (MQ=255)

                                                                               tGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTa             >  1:1622004/1‑91 (MQ=255)

                                                                                   gTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTa         <  1:3257628/91‑1 (MQ=255)

                                                                                   gTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTa         <  1:571937/91‑1 (MQ=255)

                                                                                    tGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTAc        >  1:838166/1‑91 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       >  1:673374‑M1/1‑6 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       <  1:1027102‑M1/91‑86 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       >  1:673269‑M1/1‑6 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       >  1:398687‑M1/1‑6 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       >  1:2707548‑M1/1‑6 (MQ=255)

                                                                                     gAAAGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattattt       <  1:1026614‑M1/91‑86 (MQ=255)

                                                                                      aaaGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttg      >  1:3006025‑M1/1‑5 (MQ=255)

                                                                                      aaaGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttg      >  1:1829865‑M1/1‑5 (MQ=255)

                                                                                      aaaGGcacaaaaaaacattttgcacctttcacgtcatattattgattcacagataaagttaaaattgcattgaattcttcttcattatttg      <  1:4133621‑M1/91‑87 (MQ=255)

                                                                                      aaaGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACta      <  1:3898120/91‑1 (MQ=255)

                                                                                       aaGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgg     >  1:490947‑M1/1‑4 (MQ=255)

                                                                                       aaGGcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgg     >  1:2759804‑M1/1‑4 (MQ=255)

                                                                                       aaGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtat     <  1:745206/91‑1 (MQ=255)

                                                                                         ggcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttggga   >  1:888265‑M1/1‑2 (MQ=255)

                                                                                         ggTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtatta   >  1:110572/1‑91 (MQ=255)

                                                                                          gcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgggaa  <  1:774217‑M1/91‑91 (MQ=255)

                                                                                          gcacaaaaaaacattttgcacctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgggaa  <  1:2186202‑M1/91‑91 (MQ=255)

AAGAAATAGAAGAAAGAACATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTAT  >  USA300TCH1516_ALE/1347742‑1347922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.