BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1347832	155 (1.580)	9 (0.100)	7/148	NT	6.1%	intergenic (+14/‑44)	USA300HOU_RS06695/cls_1	hypothetical protein/Cardiolipin synthase
*	?	USA300TCH1516_ALE	= 1347851	134 (1.470)	9 (0.100)	7/148	NT	6.1%	intergenic (+33/‑25)	USA300HOU_RS06695/cls_1	hypothetical protein/Cardiolipin synthase

Only 100 of 185 total aligned reads displayed.

ATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATTCATC  >  USA300TCH1516_ALE/1347761‑1347941

aTTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTtgtg                                                                                            <  1:977683/91‑1 (MQ=255)

aTTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTtgtg                                                                                            <  1:2609812/91‑1 (MQ=255)

 ttCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGc                                                                                           <  1:2186202‑M2/91‑2 (MQ=255)

  tCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcc                                                                                          >  1:888265‑M2/1‑89 (MQ=255)

  tCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcc                                                                                          <  1:1870294‑M2/91‑3 (MQ=255)

    ccAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctt                                                                                        >  1:2759804‑M2/1‑87 (MQ=255)

    ccAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctt                                                                                        >  1:1671115‑M2/1‑87 (MQ=255)

     cAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGccttt                                                                                       <  1:1477870‑M2/91‑6 (MQ=255)

     cAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGccttt                                                                                       >  1:1829865‑M2/1‑86 (MQ=255)

      aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                                      <  1:1026614‑M2/91‑7 (MQ=255)

      aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                                      >  1:673374‑M2/1‑85 (MQ=255)

      aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                                      >  1:673269‑M2/1‑85 (MQ=255)

      aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                                      >  1:398687‑M2/1‑85 (MQ=255)

      aaaTAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttc                                                                                      >  1:2707548‑M2/1‑85 (MQ=255)

       aataatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCctttct                                                                                     >  1:482447/1‑91 (MQ=255)

        ataatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCctttctt                                                                                    >  1:3030542/1‑91 (MQ=255)

          aatGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTta                                                                                  <  1:2441404/91‑1 (MQ=255)

             gaagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAg                                                                               <  1:806085/91‑1 (MQ=255)

             gaagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAg                                                                               >  1:2187336/1‑91 (MQ=255)

              aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                                              >  1:2310000/1‑91 (MQ=255)

              aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                                              >  1:13719/1‑91 (MQ=255)

              aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                                              >  1:355244/1‑91 (MQ=255)

              aagaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAgg                                                                              <  1:710106/91‑1 (MQ=255)

               agaagaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGga                                                                             >  1:3000537/1‑91 (MQ=255)

                  agaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaa                                                                          >  1:771393/1‑91 (MQ=255)

                   gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaaa                                                                         >  1:1050159/1‑91 (MQ=255)

                   gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGaaa                                                                         >  1:1527092/1‑91 (MQ=255)

                   gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCCTTCTTTATAGGAGaaa                                                                         >  1:1871935/1‑91 (MQ=255)

                   gaaTTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCCTTCTTTATAGGAGaaa                                                                         >  1:3463047/1‑91 (MQ=255)

                   gaaTTCAATGCAATTTTAACTTTATCTGTGAAGAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTCTCTTTATAGGAGaaa                                                                         <  1:3535911/91‑1 (MQ=255)

                      ttCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGa                                                                      >  1:3674230/1‑91 (MQ=255)

                       tCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAc                                                                     <  1:2792380/91‑1 (MQ=255)

                       tCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAc                                                                     >  1:940354/1‑91 (MQ=255)

                       tCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGAc                                                                     >  1:1934437/1‑91 (MQ=255)

                          aTGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTAt                                                                  >  1:2280782/1‑91 (MQ=255)

                            gCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGc                                                                <  1:1817945/91‑1 (MQ=255)

                             cAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCg                                                               >  1:2019242/1‑91 (MQ=255)

                              aaTTTGAACATTATCTGTGAATAAACAATATGACGTGAACGGTGCAAAATGTTGTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGa                                                              <  1:3865847/91‑1 (MQ=255)

                                ttttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAtt                                                            <  1:2508108/91‑1 (MQ=255)

                                ttttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAtt                                                            <  1:953664/91‑1 (MQ=255)

                                ttttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAtt                                                            <  1:513660/91‑1 (MQ=255)

                                 tttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGAttt                                                           <  1:2512856/91‑1 (MQ=255)

                                  ttAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTa                                                          <  1:2475416/91‑1 (MQ=255)

                                   tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTAc                                                         <  1:2108242/91‑1 (MQ=255)

                                   tAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTCTTTTTGTGCCTTTCTTTATAGGAGAAAAGTCTATGCGATTTAc                                                         >  1:4149543/1‑91 (MQ=255)

                                    aaCTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACa                                                        <  1:2585138/91‑1 (MQ=255)

                                      cTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACAtt                                                      >  1:1210495/1‑91 (MQ=255)

                                       tttATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACAttt                                                     <  1:241502/91‑1 (MQ=255)

                                          aTCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCa                                                  <  1:832108/91‑1 (MQ=255)

                                           tCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCaa                                                 <  1:1345838/91‑1 (MQ=255)

                                               tgAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGa                                             >  1:530685/1‑91 (MQ=255)

                                                gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                                            >  1:1771806/1‑91 (MQ=255)

                                                gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                                            >  1:1461049/1‑91 (MQ=255)

                                                gAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAt                                            >  1:3404084/1‑91 (MQ=255)

                                                 aataaataATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAtt                                           >  1:2913245/1‑91 (MQ=255)

                                                  ataaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGAttt                                          >  1:1646380/1‑91 (MQ=255)

                                                   taaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTa                                         >  1:1710022/1‑91 (MQ=255)

                                                    aaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAg                                        <  1:50410/91‑1 (MQ=255)

                                                    aaataaTATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAg                                        >  1:609875/1‑91 (MQ=255)

                                                       taataTGCCGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGaa                                     <  1:605624/91‑1 (MQ=255)

                                                       taataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattctt                                     <  1:2713883‑M2/91‑56 (MQ=255)

                                                       taataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGaa                                     <  1:2149076/91‑1 (MQ=255)

                                                       taataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGaa                                     >  1:1882729/1‑91 (MQ=255)

                                                        aataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAAc                                    >  1:1721213/1‑91 (MQ=255)

                                                        aataTGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAAc                                    <  1:881804/91‑1 (MQ=255)

                                                          tatGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGt                                  >  1:1390264/1‑91 (MQ=255)

                                                          tatGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGt                                  <  1:3630249/91‑1 (MQ=255)

                                                           atGACGTGAAAGGTGCAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttc                                 <  1:269533‑M2/91‑60 (MQ=255)

                                                           atGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGtt                                 >  1:2357517/1‑91 (MQ=255)

                                                           atGACGTGAAAGGTGCAAAATGTTTTTTCGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGtt                                 <  1:457631/91‑1 (MQ=255)

                                                            tGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTa                                >  1:1622004/1‑91 (MQ=255)

                                                            tGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTa                                <  1:356024/91‑1 (MQ=255)

                                                               cGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTAttt                             >  1:2531/1‑91 (MQ=255)

                                                                gTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTTAAACGATTTAGGAACGTTATTTa                            <  1:3257594/91‑1 (MQ=255)

                                                                 tGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTAc                           >  1:838165/1‑91 (MQ=255)

                                                                  gAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACt                          <  1:3913502/91‑1 (MQ=255)

                                                                   aaaGGTGCAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttg                         <  1:3606253‑M2/91‑68 (MQ=255)

                                                                   aaaGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACta                         <  1:2674195/91‑1 (MQ=255)

                                                                    aaGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtat                        <  1:745206/91‑1 (MQ=255)

                                                                     aGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtatt                       >  1:1984286/1‑91 (MQ=255)

                                                                      ggTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtatta                      >  1:110572/1‑91 (MQ=255)

                                                                      ggTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACtatta                      >  1:3129825/1‑91 (MQ=255)

                                                                        tGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTattatt                    <  1:4047441/91‑1 (MQ=255)

                                                                        tGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTattatt                    <  1:1894941/91‑1 (MQ=255)

                                                                        tGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTattatt                    <  1:3336504/91‑1 (MQ=255)

                                                                         gCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTAttt                   >  1:3065343/1‑91 (MQ=255)

                                                                         gCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTAttt                   <  1:3447196/91‑1 (MQ=255)

                                                                          cAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgggaatgt                  <  1:3832824‑M2/91‑75 (MQ=255)

                                                                          cAAAATGTTTTTTTGTGcctttcacgtcatattatttattcacagataaagttaaaattgcattgaattcttcttcattatttgggaatgt                  <  1:1158852‑M2/91‑75 (MQ=255)

                                                                           aaaaTGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTa                 >  1:562699/1‑91 (MQ=255)

                                                                            aaaTGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAg                >  1:2448142/1‑91 (MQ=255)

                                                                            aaaTGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATCTTAg                <  1:3270675/91‑1 (MQ=255)

                                                                               tGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCa             <  1:3411805/91‑1 (MQ=255)

                                                                                gTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCAt            >  1:425679/1‑91 (MQ=255)

                                                                                  ttttttGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTg          <  1:1006237/91‑1 (MQ=255)

                                                                                         tgCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATtcat   >  1:784524/1‑91 (MQ=255)

                                                                                          gCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATtcatc  <  1:4125059/91‑1 (MQ=255)

                                                                                          gCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATtcatc  <  1:400183/91‑1 (MQ=255)

                                                                                          gCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATtcatc  >  1:3063235/1‑91 (MQ=255)

                                                                                          gCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATtcatc  <  1:2017596/91‑1 (MQ=255)

ATTCCCAAATAATGAAGAAGAATTCAATGCAATTTTAACTTTATCTGTGAATAAATAATATGACGTGAAAGGTGCAAAATGTTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATTTACATTTTCAAACGATTTAGGAACGTTATTTACTATTATTTTAGCCATTGGATTCATC  >  USA300TCH1516_ALE/1347761‑1347941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.