| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1365739 | 99 (1.010) | 14 (0.150) | 11/148 | NT | 12.2% | intergenic (+38/‑416) | rpmG2_1/rpsN2 | 50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14 |
| ? | USA300TCH1516_ALE | = 1365764 | 109 (1.200) | intergenic (+63/‑391) | rpmG2_1/rpsN2 | 50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14 | |||||
ATGAAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1365645‑1365739‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGTATA < USA300TCH1516_ALE/1365764‑1365675 ATGAAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAA > 1:846308/1‑91ATGAAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAA > 1:4004546/1‑91 GAAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAG < 1:1305643/91‑1 AAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGC < 1:967127/91‑1 AAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGC > 1:2654012/1‑91 AAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG > 1:628116/1‑91 AAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG > 1:3123212/1‑91 AAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG < 1:3674773/91‑1 TAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAG < 1:3585212/91‑1 AACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGT < 1:485542/91‑1 AACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGT < 1:485336/91‑1 ACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTCCCCAATATAATAGGTA < 1:267126/91‑1 ACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTA < 1:3718254/91‑1 AAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAG < 1:468579/91‑1 AATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGC < 1:278609/91‑1 ATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCC < 1:3170530/91‑1 TACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGC < 1:275957/91‑1 ACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCT < 1:3661819/91‑1 CGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTT < 1:158001/91‑1 TTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTA < 1:180516/91‑1 TTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTA < 1:54171/91‑1 TACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTAT < 1:2800866/91‑1 AAAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAAC > 1:1854260/1‑91 AAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACG < 1:3879529/91‑1 AAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACG < 1:795711/91‑1 AAGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACG < 1:1107613/91‑1 AGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGT < 1:3931358/91‑1 AGCGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGT > 1:3450058/1‑91 CGAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGTAT > 1:1404044/1‑91 GAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGTATA > 1:420371/1‑91 ATGAAAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1365645‑1365739‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgAGCTCCCCAATATAATAGGTAAGCCCGCTTTATTTTCAAATCGTCGTATTTGAATGATAAGAATTACTTAGTTTCACGATGTAACGTATA < USA300TCH1516_ALE/1365764‑1365675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |