BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1365739	99 (1.010)	14 (0.150)	11/148	NT	12.2%	intergenic (+38/‑416)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14
*	?	USA300TCH1516_ALE	= 1365764	109 (1.200)	14 (0.150)	11/148	NT	12.2%	intergenic (+63/‑391)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14

Only 100 of 161 total aligned reads displayed.

AAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATA  >  USA300TCH1516_ALE/1365649‑1365829

aaaaaTATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG                                                                                            >  1:628116‑M1/1‑91 (MQ=255)

aaaaaTATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCG                                                                                            >  1:3123212‑M1/1‑91 (MQ=255)

  aaaTATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCggg                                                                                          <  1:2987729/91‑1 (MQ=255)

  aaaTATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCggg                                                                                          <  1:2986414/91‑1 (MQ=255)

   aaTATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGc                                                                                         >  1:554438/1‑91 (MQ=255)

    atatTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCt                                                                                        >  1:2770311/1‑91 (MQ=255)

    atatTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCt                                                                                        >  1:3201044/1‑91 (MQ=255)

      atTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTa                                                                                      >  1:2161071/1‑91 (MQ=255)

      atTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTa                                                                                      <  1:2774891/91‑1 (MQ=255)

      atTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTa                                                                                      >  1:2839255/1‑91 (MQ=255)

       ttGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTAc                                                                                     >  1:902148/1‑91 (MQ=255)

        tGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTAcc                                                                                    >  1:152370/1‑91 (MQ=255)

        tGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTAcc                                                                                    >  1:2261962/1‑91 (MQ=255)

        tGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTAcc                                                                                    <  1:2199642/91‑1 (MQ=255)

         gCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTAccc                                                                                   <  1:2795685/91‑2 (MQ=255)

         gCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCt                                                                                   >  1:3713743/1‑91 (MQ=255)

          cccAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCta                                                                                  <  1:2653857/91‑1 (MQ=255)

              aGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCtattat                                                                              >  1:774857/1‑91 (MQ=255)

                  tAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataatag                                                                          <  1:3585212‑M1/91‑19 (MQ=255)

                   aaaCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTgg                                                                         <  1:1095122/91‑1 (MQ=255)

                   aaaCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTgg                                                                         >  1:1748110/1‑91 (MQ=255)

                    aaCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataataggt                                                                        <  1:485542‑M1/91‑21 (MQ=255)

                    aaCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataataggt                                                                        <  1:485336‑M1/91‑21 (MQ=255)

                     aCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGggctccccaatataataggta                                                                       <  1:267126‑M1/91‑22 (MQ=255)

                     aCAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataataggta                                                                       <  1:3718254‑M1/91‑22 (MQ=255)

                      cAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGa                                                                      >  1:2069940/1‑91 (MQ=255)

                       aaaTATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAg                                                                     <  1:1056318/91‑1 (MQ=255)

                       aaaTATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAg                                                                     <  1:416863/91‑1 (MQ=255)

                        aaTATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataataggtaagc                                                                    <  1:278609‑M1/91‑25 (MQ=255)

                        aaTATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGc                                                                    <  1:4044596/91‑1 (MQ=255)

                          tataCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTc                                                                  >  1:420371‑M2/1‑90 (MQ=255)

                           ataCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcg                                                                 >  1:1404044‑M2/1‑89 (MQ=255)

                             aCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgct                                                               <  1:3931358‑M2/91‑5 (MQ=255)

                             aCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgct                                                               >  1:3450058‑M2/1‑87 (MQ=255)

                              cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGagctccccaatataataggtaagcccgctt                                                              <  1:158001‑M1/91‑31 (MQ=255)

                              cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                              <  1:1107613‑M2/91‑6 (MQ=255)

                              cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                              <  1:3879529‑M2/91‑6 (MQ=255)

                              cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                              <  1:795711‑M2/91‑6 (MQ=255)

                                  aCATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCtttttt                                                          >  1:1573738/1‑91 (MQ=255)

                                  aCATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCtttttt                                                          >  1:3170994/1‑91 (MQ=255)

                                  aCATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCAATTATATTGGGGAGCTCGCtttttt                                                          >  1:3857022/1‑91 (MQ=255)

                                    aTCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTAt                                                        <  1:679895/91‑1 (MQ=255)

                                    aTCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTAt                                                        <  1:2391264/91‑1 (MQ=255)

                                    aTCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTAt                                                        <  1:679744/91‑1 (MQ=255)

                                     tCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATg                                                       >  1:1876489/1‑91 (MQ=255)

                                      cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGCGCTCGCTTTTTTATGa                                                      >  1:139046/1‑91 (MQ=255)

                                      cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGa                                                      <  1:2893654/91‑1 (MQ=255)

                                        tGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGaaa                                                    >  1:438547/1‑91 (MQ=255)

                                         gAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAt                                                   <  1:2453902/91‑1 (MQ=255)

                                          aaaCTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAtt                                                  <  1:2447701/91‑1 (MQ=255)

                                              tAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtg                                              <  1:255398/91‑1 (MQ=255)

                                               aaGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgt                                             <  1:2519552/91‑1 (MQ=255)

                                               aaGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgt                                             <  1:84631/91‑1 (MQ=255)

                                                aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                            >  1:647563/1‑91 (MQ=255)

                                                   aaTTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAag                                         >  1:1144696/1‑91 (MQ=255)

                                                    aTTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAaga                                        <  1:1120489/91‑1 (MQ=255)

                                                       cTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGGAATTTTTGTGAAGAGTg                                     >  1:2976279/1‑91 (MQ=255)

                                                          aTCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAtt                                  <  1:353390/91‑1 (MQ=255)

                                                              ttCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATg                              <  1:1273910/91‑1 (MQ=255)

                                                               tCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATgg                             <  1:2938890/91‑1 (MQ=255)

                                                                 aaaTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGAt                           >  1:1605673/1‑91 (MQ=255)

                                                                 aaaTACGACGATTTGAAAATAAAGCGGGCTTACCTATAATATTGGGGAGCTAGCTTTTTTATGAATTTTTTGTGAAGAGTGATTACTGGAt                           >  1:3861509/1‑91 (MQ=255)

                                                                   aTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTg                         <  1:4413/91‑1 (MQ=255)

                                                                     acgacgATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAg                       <  1:2504416/91‑1 (MQ=255)

                                                                      cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                      >  1:2089860/1‑91 (MQ=255)

                                                                      cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                      >  1:170975/1‑91 (MQ=255)

                                                                      cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                      >  1:133036/1‑91 (MQ=255)

                                                                      cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCCCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                      >  1:4142104/1‑91 (MQ=255)

                                                                       gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                     <  1:3083657/91‑1 (MQ=255)

                                                                        acgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                    <  1:1327426/91‑1 (MQ=255)

                                                                        acgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                    <  1:1368456/91‑1 (MQ=255)

                                                                        acgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                    <  1:532864/91‑1 (MQ=255)

                                                                        acgaTTTGAAAATAAAGCGGGCTTACCTAGTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                    <  1:3328816/91‑1 (MQ=255)

                                                                          gaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                  <  1:2984145/91‑1 (MQ=255)

                                                                           aTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAACTTTTGTGAAGAGAGATTAATGGCTTGAGCTTCAt                 >  1:1143860/1‑91 (MQ=255)

                                                                           aTTTGAAAATAAAGCGGGCTTACATATTATATTGGGGTGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCAt                 >  1:3515501/1‑91 (MQ=255)

                                                                            tttGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTGTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATc                >  1:4137780/1‑91 (MQ=255)

                                                                              tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCgg              >  1:605945/1‑91 (MQ=255)

                                                                                aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa            >  1:3889015/1‑91 (MQ=255)

                                                                                aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa            >  1:1470604/1‑91 (MQ=255)

                                                                                 aaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAg           >  1:1222143/1‑91 (MQ=255)

                                                                                   aTAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgta         <  1:2800866‑M2/91‑59 (MQ=255)

                                                                                   aTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGaa         >  1:1935710/1‑91 (MQ=255)

                                                                                   aTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGaa         >  1:2050919/1‑91 (MQ=255)

                                                                                    tAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaa        <  1:180516‑M2/91‑60 (MQ=255)

                                                                                    tAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaa        <  1:54171‑M2/91‑60 (MQ=255)

                                                                                    tAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAAc        <  1:358573/91‑1 (MQ=255)

                                                                                     aaaGCGagctccccaatataataggtaagcccgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaac       >  1:1854260‑M1/1‑6 (MQ=255)

                                                                                     aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa       >  1:527087/1‑91 (MQ=255)

                                                                                     aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa       >  1:527447/1‑91 (MQ=255)

                                                                                      aaGCGagctccccaatataataggtaagcccgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacg      <  1:1107613‑M1/91‑87 (MQ=255)

                                                                                      aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACaa      <  1:1204260/91‑1 (MQ=255)

                                                                                      aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACaa      >  1:3500437/1‑91 (MQ=255)

                                                                                      aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGACTAATGGATTGAGTTTCATCGGTAGAACaa      >  1:2309345/1‑91 (MQ=255)

                                                                                      aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAATAATGGATTGAGTTTCATCGGTAGAACaa      >  1:2309598/1‑91 (MQ=255)

                                                                                       aGCGagctccccaatataataggtaagcccgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgt     >  1:3450058‑M1/1‑4 (MQ=255)

                                                                                       aGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgt     <  1:3661819‑M2/91‑63 (MQ=255)

                                                                                        gCGGGCTTACCTATTATATTGGGGATCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAata    <  1:3851608/91‑1 (MQ=255)

                                                                                        gCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgta    <  1:275957‑M2/91‑64 (MQ=255)

                                                                                          gggCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAatata  >  1:1775684/1‑91 (MQ=255)

AAAAATATTGCCCAAGATTAAACAAATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATA  >  USA300TCH1516_ALE/1365649‑1365829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.