BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1365739	99 (1.010)	14 (0.150)	11/148	NT	12.2%	intergenic (+38/‑416)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14
*	?	USA300TCH1516_ALE	= 1365764	109 (1.200)	14 (0.150)	11/148	NT	12.2%	intergenic (+63/‑391)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14

Only 100 of 153 total aligned reads displayed.

TATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTTTATT  >  USA300TCH1516_ALE/1365675‑1365854

tataCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTc                                                                                           >  1:420371‑M2/1‑90 (MQ=255)

   aCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgct                                                                                        <  1:3931358‑M2/91‑5 (MQ=255)

   aCGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgct                                                                                        >  1:3450058‑M2/1‑87 (MQ=255)

    cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                                                       <  1:1107613‑M2/91‑6 (MQ=255)

        aCATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCtttttt                                                                                   >  1:1573738/1‑91 (MQ=255)

          aTCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTAt                                                                                 <  1:2391264/91‑1 (MQ=255)

          aTCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTAt                                                                                 <  1:679744/91‑1 (MQ=255)

           tCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATg                                                                                >  1:1876489/1‑91 (MQ=255)

            cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGCGCTCGCTTTTTTATGa                                                                               >  1:139046/1‑91 (MQ=255)

            cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGa                                                                               <  1:2893654/91‑1 (MQ=255)

               gAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAt                                                                            <  1:2453872/91‑1 (MQ=255)

               gAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAt                                                                            <  1:2453902/91‑1 (MQ=255)

                     aaGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgt                                                                      <  1:84631/91‑1 (MQ=255)

                     aaGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgt                                                                      <  1:2519552/91‑1 (MQ=255)

                      aGTAATTCTTATCATTCAAATACGACGATTTGAAAATCAAGCGGGCTTACCCATTATATTGGGGAGCTCACTTTTTTATGAAATTCTtgtg                                                                     >  1:3860398/1‑91 (MQ=255)

                      aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     >  1:873584/1‑91 (MQ=255)

                          aTTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAaga                                                                 <  1:505427/91‑1 (MQ=255)

                           ttCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAagag                                                                >  1:73095/1‑91 (MQ=255)

                             cTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGGAATTTTTGTGAAGAGTg                                                              >  1:2976336/1‑91 (MQ=255)

                              ttATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGa                                                             <  1:1127073/91‑1 (MQ=255)

                               tATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAt                                                            >  1:1338036/1‑91 (MQ=255)

                                aTCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAtt                                                           <  1:353390/91‑1 (MQ=255)

                                    ttCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATg                                                       <  1:1273910/91‑1 (MQ=255)

                                     tCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATgg                                                      <  1:2938890/91‑1 (MQ=255)

                                       aaaTACGACGATTTGAAAATAAAGCGGGCTTACCTATAATATTGGGGAGCTAGCTTTTTTATGAATTTTTTGTGAAGAGTGATTACTGGAt                                                    >  1:3861509/1‑91 (MQ=255)

                                         aTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTg                                                  >  1:1108148/1‑91 (MQ=255)

                                         aTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTg                                                  <  1:4413/91‑1 (MQ=255)

                                          tACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGa                                                 <  1:2037495/91‑1 (MQ=255)

                                          tACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGa                                                 <  1:1698949/91‑1 (MQ=255)

                                            cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                                               >  1:133036/1‑91 (MQ=255)

                                            cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                                               >  1:2089860/1‑91 (MQ=255)

                                            cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                                               >  1:170975/1‑91 (MQ=255)

                                             gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                                              <  1:3083657/91‑1 (MQ=255)

                                              acgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                                             <  1:654590/91‑1 (MQ=255)

                                              acgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGttt                                             <  1:532864/91‑1 (MQ=255)

                                                gaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                                           <  1:2984145/91‑1 (MQ=255)

                                                gaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                                           >  1:1260677/1‑91 (MQ=255)

                                                gaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                                           >  1:426093/1‑91 (MQ=255)

                                                 aTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAACTTTTGTGAAGAGAGATTAATGGCTTGAGCTTCAt                                          >  1:1143860/1‑91 (MQ=255)

                                                  tttGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTGTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATc                                         >  1:4137780/1‑91 (MQ=255)

                                                    tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCgg                                       <  1:2493007/91‑1 (MQ=255)

                                                    tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCgg                                       >  1:605945/1‑91 (MQ=255)

                                                    tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCgg                                       >  1:606053/1‑91 (MQ=255)

                                                      aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa                                     >  1:3889015/1‑91 (MQ=255)

                                                      aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa                                     >  1:3378756/1‑91 (MQ=255)

                                                      aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa                                     >  1:1470604/1‑91 (MQ=255)

                                                       aaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAg                                    >  1:1222143/1‑91 (MQ=255)

                                                        aaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGa                                   >  1:3572176/1‑91 (MQ=255)

                                                         aTAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgta                                  <  1:2800866‑M2/91‑59 (MQ=255)

                                                         aTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGaa                                  >  1:1935710/1‑91 (MQ=255)

                                                         aTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGaa                                  >  1:2050919/1‑91 (MQ=255)

                                                          tAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaa                                 <  1:54171‑M2/91‑60 (MQ=255)

                                                          tAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaa                                 <  1:180516‑M2/91‑60 (MQ=255)

                                                          tAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAAc                                 <  1:2781404/91‑1 (MQ=255)

                                                          tAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAAc                                 <  1:358573/91‑1 (MQ=255)

                                                          tAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAAc                                 <  1:3745085/91‑1 (MQ=255)

                                                           aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa                                >  1:527131/1‑91 (MQ=255)

                                                           aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa                                >  1:527087/1‑91 (MQ=255)

                                                            aaGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacg                               <  1:158001‑M2/91‑62 (MQ=255)

                                                            aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACaa                               <  1:1204260/91‑1 (MQ=255)

                                                            aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACaa                               >  1:3500437/1‑91 (MQ=255)

                                                            aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGACTAATGGATTGAGTTTCATCGGTAGAACaa                               >  1:2309345/1‑91 (MQ=255)

                                                             aGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgt                              <  1:3661819‑M2/91‑63 (MQ=255)

                                                             aGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAat                              >  1:2526860/1‑91 (MQ=255)

                                                              gCGGGCTTACCTATTATATTGGGGATCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAata                             <  1:3851608/91‑1 (MQ=255)

                                                                gggCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAatata                           >  1:1775684/1‑91 (MQ=255)

                                                                 ggCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatat                          <  1:3170530‑M2/91‑67 (MQ=255)

                                                                 ggCGTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAacatat                          <  1:3269866/91‑1 (MQ=255)

                                                                  gCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATg                         <  1:2145391/91‑1 (MQ=255)

                                                                  gCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATg                         <  1:1907282/91‑1 (MQ=255)

                                                                     tACCTATTATATTGGGGAGCCcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatatttgt                      <  1:267126‑M2/91‑71 (MQ=255)

                                                                      aCCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatatttgtt                     <  1:485336‑M2/91‑72 (MQ=255)

                                                                      aCCTATTATATTGGGCAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATta                     >  1:3539145/1‑91 (MQ=255)

                                                                       ccTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATtat                    <  1:2577031/91‑1 (MQ=255)

                                                                       ccTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATtat                    >  1:455350/1‑91 (MQ=255)

                                                                        cTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatatttgttta                   <  1:3585212‑M2/91‑74 (MQ=255)

                                                                         tattatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTatat                  <  1:3470983/91‑1 (MQ=255)

                                                                          attatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATAtt                 <  1:76560/91‑1 (MQ=255)

                                                                             atatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgt              <  1:1473372/91‑1 (MQ=255)

                                                                             atatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgt              >  1:3268385/1‑91 (MQ=255)

                                                                             atatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgt              <  1:500461/91‑1 (MQ=255)

                                                                             atatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgt              <  1:1225013/91‑1 (MQ=255)

                                                                              tatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTAAATTAgtt             <  1:1579220/91‑1 (MQ=255)

                                                                               atTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATGGGTAGAACAATATATGATTATATTAgttg            >  1:3329890/1‑91 (MQ=255)

                                                                               atTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttg            >  1:2499471/1‑91 (MQ=255)

                                                                               atTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttg            >  1:1764284/1‑91 (MQ=255)

                                                                                ttGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttgt           >  1:1891681/1‑91 (MQ=255)

                                                                                 tGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttgtt          <  1:1231800/91‑1 (MQ=255)

                                                                                  ggggAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTa         >  1:1388978/1‑91 (MQ=255)

                                                                                   gggAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTAc        >  1:2914341/1‑91 (MQ=255)

                                                                                     gAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACtt      >  1:2835324/1‑91 (MQ=255)

                                                                                       gcttgcttTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTTGTTGTTACTtta    <  1:3207811/91‑1 (MQ=255)

                                                                                        cTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttat   >  1:2772024/1‑91 (MQ=255)

                                                                                        cTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttat   >  1:4103499/1‑91 (MQ=255)

                                                                                        cTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttat   <  1:1758002/91‑1 (MQ=255)

                                                                                        cTCGCTTTTTTATGAAAATTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttat   >  1:2362231/1‑91 (MQ=255)

                                                                                         tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  1:3234374/91‑1 (MQ=255)

                                                                                         tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  1:3443736/91‑1 (MQ=255)

                                                                                         tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  1:816481/91‑1 (MQ=255)

                                                                                         tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  1:3643275/91‑1 (MQ=255)

TATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTTTATT  >  USA300TCH1516_ALE/1365675‑1365854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.