| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1368741 = | 111 (1.130) | 7 (0.080) | 4/150 | NT | 6.3% | intergenic (+145/+235) | USA300TCH1516_01277/lexA_1 | hypothetical protein/LexA repressor |
| ? | USA300TCH1516_ALE | 1368771 = | 103 (1.120) | intergenic (+175/+205) | USA300TCH1516_01277/lexA_1 | hypothetical protein/LexA repressor | |||||
ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1368835‑1368741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > USA300TCH1516_ALE/1368771‑1368859 ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAG < 1:1249105/91‑1ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAG < 1:761696/91‑1ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAG < 1:761358/91‑1ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAG < 1:761279/91‑1 ATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAGCGA < 1:969048/91‑1 ATCTCATTCTTTAATATAAATTTGGAATTACAGATTTCTGCAAAATCTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAGCGA > 1:3288202/1‑91 ACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATA > 1:1911297/1‑91 TCGCCCCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGAT > 1:1367142/1‑91 TCGCCCCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGAT > 1:273114/1‑91 CGCCCCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATT > 1:2058484/1‑91 CCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCT > 1:3764794/1‑91 CCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCT > 1:3764930/1‑91 CCCGTAATAATTTACAGGAGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATCATCT > 1:2765367/1‑91 CGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTT < 1:710643/91‑1 AGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > 1:3383295/1‑91 AGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > 1:3383296/1‑91 AGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > 1:3383401/1‑91 AGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG < 1:421870/91‑1 AGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > 1:3383202/1‑91 ATAATCTCATTCTTTAATATAAATTTTGAATTACAGATTTCTGCAAAATGTTACACAAATTAAAACTCGCCCCCGTAATAATTTACAGGAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1368835‑1368741‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG > USA300TCH1516_ALE/1368771‑1368859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |