BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1368741 =	111 (1.130)	7 (0.080)	4/150	NT	6.3%	intergenic (+145/+235)	USA300TCH1516_01277/lexA_1	hypothetical protein/LexA repressor
*	?	USA300TCH1516_ALE	1368771 =	103 (1.120)	7 (0.080)	4/150	NT	6.3%	intergenic (+175/+205)	USA300TCH1516_01277/lexA_1	hypothetical protein/LexA repressor

Only 100 of 142 total aligned reads displayed.

TGATGACAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAG  >  USA300TCH1516_ALE/1368652‑1368830

tgatgaCAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGgct                                                                                          >  1:1286004/1‑91 (MQ=255)

caaacagaaattgcgaattgttagataatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCt                                                                                          <  1:421870‑M1/2‑1 (MQ=255)

caaacagaaattgcgaattgttagataatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCt                                                                                          >  1:3383296‑M1/90‑91 (MQ=255)

caaacagaaattgcgaattgttagataatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCt                                                                                          >  1:3383295‑M1/90‑91 (MQ=255)

caaacagaaattgcgaattgttagataatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCt                                                                                          >  1:3383202‑M1/90‑91 (MQ=255)

 gatgaCAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGgctc                                                                                         >  1:127803/1‑91 (MQ=255)

    gaCAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGgctcgct                                                                                      <  1:3083891/91‑1 (MQ=255)

    gaCAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGactcgct                                                                                      <  1:3226230/91‑1 (MQ=255)

     acaacaGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGgctcgctc                                                                                     >  1:741175/1‑91 (MQ=255)

      caacaGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTcc                                                                                    >  1:3415063/1‑91 (MQ=255)

          aGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTa                                                                                >  1:692143/1‑91 (MQ=255)

             tAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAat                                                                             >  1:2661377/1‑91 (MQ=255)

             tAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAat                                                                             >  1:2352048/1‑91 (MQ=255)

              aaaCCAAAAGATGCGGATATACTTGAACGCGTGAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGGTCGCCCCCGTaataa                                                                            <  1:3535794/91‑4 (MQ=255)

              aaaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAatt                                                                            <  1:728240/91‑1 (MQ=255)

              aaaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAatt                                                                            <  1:1644206/91‑1 (MQ=255)

              aaaCCAAAAAATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAatt                                                                            <  1:3986001/91‑1 (MQ=255)

               aaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGATAAAAATAATAATGGCTCGCTCCTGTAAatta                                                                           <  1:3689321/91‑1 (MQ=255)

               aaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAGAAATAATAATGGCTCGCTCCTGTAAatta                                                                           >  1:3329816/1‑91 (MQ=255)

               aaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCCCCCGTaataat                                                                           <  1:2451953/91‑5 (MQ=255)

               aaCCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCCCCCGTaataat                                                                           <  1:2451586/91‑5 (MQ=255)

                   aaaaGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTAc                                                                       <  1:3803121/91‑1 (MQ=255)

                   aaaaGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTAc                                                                       >  1:4016678/1‑91 (MQ=255)

                    aaaGATGCGGATATACTTGAACGCGTCAAAGATATTCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACg                                                                      <  1:1152754/91‑1 (MQ=255)

                     aaGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACgg                                                                     <  1:2973873/91‑1 (MQ=255)

                     aaGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACgg                                                                     <  1:2973696/91‑1 (MQ=255)

                      agatgatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACggg                                                                    >  1:2765367‑M1/68‑91 (MQ=255)

                      agataatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACggg                                                                    >  1:3764930‑M1/68‑91 (MQ=255)

                      aGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACggg                                                                    <  1:3189615/91‑1 (MQ=255)

                       gATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACgggg                                                                   >  1:2110633/1‑91 (MQ=255)

                        aTGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACggggg                                                                  <  1:2274720/91‑1 (MQ=255)

                         tGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAACGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGc                                                                 >  1:3294352/1‑91 (MQ=255)

                          gCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAATAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCg                                                                >  1:3291998/1‑91 (MQ=255)

                          aatctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACGGGGGCg                                                                >  1:2058484‑M1/64‑91 (MQ=255)

                           cGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGa                                                               >  1:1370789/1‑91 (MQ=255)

                           atctcattctttaatataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACGGGGGCGa                                                               >  1:1367142‑M1/63‑91 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              <  1:2515234/91‑1 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              >  1:1453967/1‑91 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              <  1:2606271/91‑1 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              >  1:1828524/1‑91 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              <  1:3736495/91‑1 (MQ=255)

                            ggATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAg                                                              >  1:1828445/1‑91 (MQ=255)

                              atatACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGtt                                                            <  1:1186631/91‑1 (MQ=255)

                              atatACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGtt                                                            <  1:2004234/91‑1 (MQ=255)

                              atatACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGtt                                                            <  1:348966/91‑1 (MQ=255)

                               tataCTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGttt                                                           <  1:1164286/91‑1 (MQ=255)

                                    ttGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAAtt                                                      >  1:627531/1‑91 (MQ=255)

                                     tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAAttt                                                     >  1:1544378/1‑91 (MQ=255)

                                     tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGACTTTTAAttt                                                     >  1:3972296/1‑91 (MQ=255)

                                     tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGACTTTTAAttt                                                     >  1:3972441/1‑91 (MQ=255)

                                       aaCGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTtgt                                                   <  1:2381106/91‑1 (MQ=255)

                                       aaCGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTtgt                                                   >  1:2544538/1‑91 (MQ=255)

                                         tataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                 >  1:1911297‑M1/49‑91 (MQ=255)

                                         cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                 <  1:2712540/91‑1 (MQ=255)

                                         cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                 <  1:2490995/91‑1 (MQ=255)

                                           cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                               >  1:1312586/1‑91 (MQ=255)

                                           cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                               >  1:2358307/1‑91 (MQ=255)

                                           cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                               <  1:2382600/91‑1 (MQ=255)

                                             tCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACa                                             >  1:3902128/1‑91 (MQ=255)

                                             tCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACa                                             >  1:198765/1‑91 (MQ=255)

                                              cAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACAt                                            >  1:3836900/1‑91 (MQ=255)

                                                aaGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACAttt                                          >  1:2923699/1‑91 (MQ=255)

                                                  gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                        <  1:63366/91‑1 (MQ=255)

                                                  gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                        <  1:1063751/91‑1 (MQ=255)

                                                  gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                        <  1:1050955/91‑1 (MQ=255)

                                                    aatgcTTAATAAAGAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCa                                      <  1:3337973/87‑1 (MQ=255)

                                                      taCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGa                                    <  1:4084693/91‑1 (MQ=255)

                                                      taCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGa                                    <  1:716057/91‑1 (MQ=255)

                                                       aCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGaa                                   >  1:2845954/1‑91 (MQ=255)

                                                       aCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGaa                                   >  1:238194/1‑91 (MQ=255)

                                                          taataaAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATc                                <  1:2788535/91‑1 (MQ=255)

                                                            ataaAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTg                              <  1:3212178/91‑1 (MQ=255)

                                                              aaaaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTa                            >  1:1240937/1‑91 (MQ=255)

                                                                aaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAt                          >  1:5510/1‑91 (MQ=255)

                                                                aaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAt                          <  1:767624/91‑1 (MQ=255)

                                                                 aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                         >  1:2295787/1‑91 (MQ=255)

                                                                 aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                         >  1:2295560/1‑91 (MQ=255)

                                                                 aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                         <  1:4072743/91‑1 (MQ=255)

                                                                  aagaaagaAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTc                        <  1:1208524/91‑1 (MQ=255)

                                                                  aagaaagaAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTc                        <  1:2785695/91‑1 (MQ=255)

                                                                      aagaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCaaaa                    <  1:1779156/91‑1 (MQ=255)

                                                                        gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                  >  1:1469315/1‑91 (MQ=255)

                                                                        gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                  >  1:1660626/1‑91 (MQ=255)

                                                                        gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                  >  1:1307991/1‑91 (MQ=255)

                                                                        gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                  >  1:3056021/1‑91 (MQ=255)

                                                                            aaaaTAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTtata              >  1:4029992/1‑91 (MQ=255)

                                                                               ataataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTa           <  1:262680/91‑1 (MQ=255)

                                                                                  ataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAg        >  1:1791402/1‑91 (MQ=255)

                                                                                  ataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAg        <  1:3770639/91‑1 (MQ=255)

                                                                                   taatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGa       >  1:4123587/1‑91 (MQ=255)

                                                                                   taatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGa       <  1:3569499/91‑1 (MQ=255)

                                                                                   taatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGa       >  1:2903625/1‑91 (MQ=255)

                                                                                    aatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGTAGAAATCTGTAATTCAAAATTTATATTAAAGaa      >  1:3680600/1‑91 (MQ=255)

                                                                                    aatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGaa      >  1:570607/1‑91 (MQ=255)

                                                                                      tGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATg    <  1:1566545/91‑1 (MQ=255)

                                                                                        gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag  <  1:1607392/91‑1 (MQ=255)

                                                                                        gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag  <  1:1415359/91‑1 (MQ=255)

                                                                                        gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag  <  1:2407479/91‑1 (MQ=255)

                                                                                        gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag  <  1:2622063/91‑1 (MQ=255)

                                                                                        gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag  <  1:1127062/91‑1 (MQ=255)

TGATGACAACAGATAAACCAAAAGATGCGGATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAG  >  USA300TCH1516_ALE/1368652‑1368830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.