BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1368741 =	111 (1.130)	7 (0.080)	4/150	NT	6.3%	intergenic (+145/+235)	USA300TCH1516_01277/lexA_1	hypothetical protein/LexA repressor
*	?	USA300TCH1516_ALE	1368771 =	103 (1.120)	7 (0.080)	4/150	NT	6.3%	intergenic (+175/+205)	USA300TCH1516_01277/lexA_1	hypothetical protein/LexA repressor

Only 100 of 131 total aligned reads displayed.

ATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG  >  USA300TCH1516_ALE/1368682‑1368859

atatACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGtt                                                                                         <  1:348966/91‑1 (MQ=255)

atatACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGtt                                                                                         <  1:1186631/91‑1 (MQ=255)

      ttGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAAtt                                                                                   >  1:627531/1‑91 (MQ=255)

       tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAAttt                                                                                  >  1:1544378/1‑91 (MQ=255)

       tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGACTTTTAAttt                                                                                  >  1:3972441/1‑91 (MQ=255)

       tGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGACTTTTAAttt                                                                                  >  1:3972296/1‑91 (MQ=255)

         aaCGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTtgt                                                                                >  1:2544538/1‑91 (MQ=255)

           tataaattttgaattacagatttctgcaaaatgttacacaaattaaaaCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                                              >  1:1911297‑M1/49‑91 (MQ=255)

           cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                                              <  1:2712540/91‑1 (MQ=255)

           cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                                              <  1:1483668/91‑1 (MQ=255)

           cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                                              <  1:582175/91‑1 (MQ=255)

           cgcgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTgtgt                                                                              <  1:2490995/91‑1 (MQ=255)

             cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                                                            >  1:1312586/1‑91 (MQ=255)

             cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                                                            <  1:2382600/91‑1 (MQ=255)

             cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                                                            <  1:2382614/91‑1 (MQ=255)

             cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                                                            >  1:2358605/1‑91 (MQ=255)

             cgTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTaa                                                                            >  1:2358307/1‑91 (MQ=255)

               tCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACa                                                                          >  1:201884/1‑91 (MQ=255)

               tCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACa                                                                          >  1:198765/1‑91 (MQ=255)

                cAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACAt                                                                         >  1:3836900/1‑91 (MQ=255)

                    gATATACTTAATAAAAAAGAAAGAAAAAAGTGATAATGGCTCGCACCTGTAAAGTATGACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                                                     <  1:3317553/91‑1 (MQ=255)

                    gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                                                     <  1:2503893/91‑1 (MQ=255)

                    gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                                                     <  1:1050955/91‑1 (MQ=255)

                    gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                                                     <  1:63366/91‑1 (MQ=255)

                    gATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTg                                                                     <  1:1063751/91‑1 (MQ=255)

                        taCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGa                                                                 <  1:716057/91‑1 (MQ=255)

                        taCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGa                                                                 <  1:4084693/91‑1 (MQ=255)

                         aCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGaa                                                                >  1:2845954/1‑91 (MQ=255)

                         aCTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGaa                                                                >  1:238194/1‑91 (MQ=255)

                            taataaAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATc                                                             <  1:2788535/91‑1 (MQ=255)

                              ataaAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTg                                                           <  1:3212178/91‑1 (MQ=255)

                                aaaaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTa                                                         >  1:2234896/1‑91 (MQ=255)

                                aaaaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTa                                                         >  1:1240937/1‑91 (MQ=255)

                                  aaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAt                                                       >  1:5510/1‑91 (MQ=255)

                                  aaaaGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAt                                                       <  1:767624/91‑1 (MQ=255)

                                   aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                                                      >  1:2295787/1‑91 (MQ=255)

                                   aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                                                      <  1:4072743/91‑1 (MQ=255)

                                   aaagaaagAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAAtt                                                      >  1:1950937/1‑91 (MQ=255)

                                    aagaaagaAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTc                                                     <  1:2785695/91‑1 (MQ=255)

                                    aagaaagaAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTc                                                     <  1:1208524/91‑1 (MQ=255)

                                    aagaaagaAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTc                                                     <  1:1317040/91‑1 (MQ=255)

                                        aagaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCaaaa                                                 <  1:1779156/91‑1 (MQ=255)

                                          gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                                               >  1:1307991/1‑91 (MQ=255)

                                          gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                                               <  1:3220283/91‑1 (MQ=255)

                                          gaaaAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAAtt                                               >  1:1469315/1‑91 (MQ=255)

                                              aaaaTAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTtata                                           >  1:4029992/1‑91 (MQ=255)

                                                aataataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATAtt                                         <  1:2631205/91‑1 (MQ=255)

                                                 ataataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTa                                        <  1:262680/91‑1 (MQ=255)

                                                 ataataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTa                                        >  1:2919930/1‑91 (MQ=255)

                                                    ataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAg                                     >  1:3779213/1‑91 (MQ=255)

                                                    ataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAg                                     >  1:1791402/1‑91 (MQ=255)

                                                    ataatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAg                                     >  1:3014852/1‑91 (MQ=255)

                                                     taatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGa                                    >  1:2903625/1‑91 (MQ=255)

                                                      aatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGaa                                   >  1:570607/1‑91 (MQ=255)

                                                      aatGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGaa                                   >  1:3373601/1‑91 (MQ=255)

                                                       atGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAAt                                  >  1:468219/1‑91 (MQ=255)

                                                         ggCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATga                                <  1:768672/91‑1 (MQ=255)

                                                          gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag                               <  1:1127062/91‑1 (MQ=255)

                                                          gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag                               <  1:1415359/91‑1 (MQ=255)

                                                          gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag                               <  1:1607392/91‑1 (MQ=255)

                                                          gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag                               <  1:1607532/91‑1 (MQ=255)

                                                          gctcgctcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATgag                               <  1:1184785/91‑1 (MQ=255)

                                                            TCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAAGATTTTGCAGAAATCTGTAATTCCAAATTTATATTAAAGAATGAGAt                             >  1:3288202‑M1/1‑91 (MQ=255)

                                                             cgcccccgtaataatttacaggagcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGAtt                            >  1:2058484‑M2/29‑91 (MQ=255)

                                                               CTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTAt                          <  1:1249105‑M1/91‑1 (MQ=255)

                                                               CTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTAt                          <  1:761279‑M1/91‑1 (MQ=255)

                                                               CTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTAt                          <  1:761358‑M1/91‑1 (MQ=255)

                                                                tcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATc                         <  1:124168/91‑1 (MQ=255)

                                                                tcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATc                         <  1:474980/91‑1 (MQ=255)

                                                                tcCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATc                         <  1:2692236/91‑1 (MQ=255)

                                                                 cccgtaataatttacaggagcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCt                        >  1:3764794‑M2/25‑91 (MQ=255)

                                                                 cccgtaataatttacaggagcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCt                        >  1:3764930‑M2/25‑91 (MQ=255)

                                                                 cccgtaataatttacaggagcgagTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATCATCt                        >  1:2765367‑M2/25‑91 (MQ=255)

                                                                 ccTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCt                        <  1:20204/91‑1 (MQ=255)

                                                                 ccTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCt                        <  1:1010031/91‑1 (MQ=255)

                                                                 ccTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCt                        <  1:3908625/91‑1 (MQ=255)

                                                                   tGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTaa                      >  1:3800896/1‑91 (MQ=255)

                                                                    gTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAAAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAAc                     <  1:583932/91‑1 (MQ=255)

                                                                      aaaTTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACaa                   <  1:300749/91‑1 (MQ=255)

                                                                      aaaTTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACaa                   >  1:3761600/1‑91 (MQ=255)

                                                                       aaTTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAAt                  >  1:259681/1‑91 (MQ=255)

                                                                       aaTTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAAt                  <  1:3579035/91‑1 (MQ=255)

                                                                        attattACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAAtt                 >  1:3604629/1‑91 (MQ=255)

                                                                         ttattaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTc                <  1:622673/91‑1 (MQ=255)

                                                                         ttattaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTc                <  1:2957912/91‑1 (MQ=255)

                                                                         ttattaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTc                <  1:1649576/91‑1 (MQ=255)

                                                                         ttattaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTc                <  1:2562812/91‑1 (MQ=255)

                                                                         ttattaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTc                >  1:3756784/1‑91 (MQ=255)

                                                                           attaCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAGTTTATATTAAAGAATGAGATTATCTAACAATTTGc              >  1:361193/1‑91 (MQ=255)

                                                                           attaCGGGGGCGAGTTTTAAGTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGc              <  1:2606671/91‑1 (MQ=255)

                                                                            ttaCGGGGGCGAGTTTTAATTTGTGTAACATTTCGCACAAATCTGTCATTCAAAATTTACATTAAAGAATGAGATTATCTAACAATTCGCa             >  1:3312315/1‑91 (MQ=255)

                                                                             taCGGGGGCGAGTTTTAATTTGTGTAGCATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCaa            >  1:3264012/1‑91 (MQ=255)

                                                                             taCGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCaa            >  1:3264011/1‑91 (MQ=255)

                                                                                gggggCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAAttt         <  1:3443145/91‑1 (MQ=255)

                                                                                gggggCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAAttt         <  1:922992/91‑1 (MQ=255)

                                                                                   ggCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTg      <  1:1937535/91‑1 (MQ=255)

                                                                                       agTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTg  <  1:421870‑M2/89‑1 (MQ=255)

                                                                                       agTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTg  >  1:3383401‑M2/3‑91 (MQ=255)

                                                                                       agTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTg  >  1:3383295‑M2/3‑91 (MQ=255)

                                                                                       agTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTg  >  1:3383202‑M2/3‑91 (MQ=255)

ATATACTTGAACGCGTCAAAGATATACTTAATAAAAAAGAAAGAAAAAAATAATAATGGCTCGCTCCTGTAAATTATTACGGGGGCGAGTTTTAATTTGTGTAACATTTTGCAGAAATCTGTAATTCAAAATTTATATTAAAGAATGAGATTATCTAACAATTCGCAATTTCTGTTTG  >  USA300TCH1516_ALE/1368682‑1368859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.