| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1383873 | 91 (0.930) | 6 (0.060) | 5/154 | NT | 6.4% | intergenic (+90/‑90) | acnA/USA300HOU_RS06875 | Aconitate hydratase A/Putative esterase |
| ? | USA300TCH1516_ALE | = 1383903 | 88 (0.930) | intergenic (+120/‑60) | acnA/USA300HOU_RS06875 | Aconitate hydratase A/Putative esterase | |||||
TAAAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1383781‑1383873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTATATCATAAAGTTTATAGAAGTATTTTTGAGCACTATCAAAGTGCCTCAAATAC < USA300TCH1516_ALE/1383903‑1383814 TAAAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAATAATACTTCTATAAACTTTATGATATAATA > 1:3332723/1‑91 AAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGG < 1:2745335/91‑1 TTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTG < 1:893101/91‑1 GTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTGAACCGAC < 1:548352/91‑1 TATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTGAACCGACC < 1:3965532/91‑1 TATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTGAACCGACC < 1:3965778/91‑1 GAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTA < 1:3250331/91‑1 ACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTATATCA < 1:639395/91‑1 AGGCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTATATCATAAAGTTTATAGAAGTATTTTTGAGCACTATCAAAGTGCCTCAAAT < 1:2728389/91‑1 GCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTATATCATAAAGTTTATAGAAGTATTTTTGAGCACTATCAAAGTGCCTCAAATAC < 1:2361689/91‑1 TAAAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1383781‑1383873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCCGGCCAAGAACACAAAGGTTTTGAACCGACCTATTATATCATAAAGTTTATAGAAGTATTTTTGAGCACTATCAAAGTGCCTCAAATAC < USA300TCH1516_ALE/1383903‑1383814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |