BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1383873	91 (0.930)	6 (0.060)	5/154	NT	6.4%	intergenic (+90/‑90)	acnA/USA300HOU_RS06875	Aconitate hydratase A/Putative esterase
*	?	USA300TCH1516_ALE	= 1383903	88 (0.930)	6 (0.060)	5/154	NT	6.4%	intergenic (+120/‑60)	acnA/USA300HOU_RS06875	Aconitate hydratase A/Putative esterase

Only 100 of 107 total aligned reads displayed.

GTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAGCG  >  USA300TCH1516_ALE/1383814‑1383992

gTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGc                                                                                          <  1:2361689‑M2/91‑2 (MQ=255)

  aTTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcct                                                                                        <  1:2728389‑M2/91‑4 (MQ=255)

    ttGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCctct                                                                                      <  1:2858251/91‑1 (MQ=255)

    ttGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGATTCAAAACCTTTGTGTTCTTGGCCGGCctct                                                                                      <  1:1333516/91‑1 (MQ=255)

     tGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCtctt                                                                                     <  1:1902725/91‑1 (MQ=255)

      gAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCtcttc                                                                                    <  1:2882552/91‑1 (MQ=255)

        ggCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTcttctt                                                                                  <  1:2645427/91‑1 (MQ=255)

         gCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTg                                                                                 >  1:3591562/1‑91 (MQ=255)

            cTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                                              >  1:232797/1‑91 (MQ=255)

            cTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                                              >  1:231498/1‑91 (MQ=255)

            cTTTGATAATGCTCAAAAATACCTCTATAAACTTTATGATTTAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                                              <  1:1991867/91‑1 (MQ=255)

             tttGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAtt                                                                             <  1:1435249/91‑1 (MQ=255)

              ttGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAttt                                                                            >  1:3988162/1‑91 (MQ=255)

               tGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAtttt                                                                           >  1:1340807/1‑91 (MQ=255)

                gATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTa                                                                          >  1:80761/1‑91 (MQ=255)

                   aGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGt                                                                       <  1:4127166/91‑1 (MQ=255)

                   aGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGt                                                                       <  1:1584723/91‑1 (MQ=255)

                    gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                                                      >  1:3348195/1‑91 (MQ=255)

                    gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                                                      >  1:1066920/1‑91 (MQ=255)

                    gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                                                      <  1:4045604/91‑1 (MQ=255)

                    gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                                                      >  1:138637/1‑91 (MQ=255)

                    gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                                                      >  1:138795/1‑91 (MQ=255)

                      gCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAg                                                                    >  1:361233/1‑91 (MQ=255)

                      gCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAg                                                                    >  1:3921187/1‑91 (MQ=255)

                          aaaaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATg                                                                <  1:1944331/91‑1 (MQ=255)

                           aaaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATga                                                               <  1:3562588/91‑1 (MQ=255)

                           aaaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATga                                                               >  1:3145347/1‑91 (MQ=255)

                            aaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATgag                                                              <  1:4096078/91‑1 (MQ=255)

                              aTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGat                                                            <  1:1786902/91‑1 (MQ=255)

                               tACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGata                                                           >  1:2569389/1‑91 (MQ=255)

                                aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                                                          <  1:171953/91‑1 (MQ=255)

                                aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                                                          >  1:1097506/1‑91 (MQ=255)

                                aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                                                          <  1:3742651/91‑1 (MQ=255)

                                  ttCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATaa                                                        >  1:396558/1‑91 (MQ=255)

                                  ttCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATaa                                                        <  1:3431853/91‑1 (MQ=255)

                                  ttCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATaa                                                        >  1:2775245/1‑91 (MQ=255)

                                     tataAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGt                                                     <  1:1471938/91‑1 (MQ=255)

                                          aCTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAAc                                                <  1:1118914/91‑1 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               <  1:3719485/91‑1 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               >  1:3042142/1‑91 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               <  1:1728722/91‑1 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               >  1:2470689/1‑91 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               >  1:1866761/1‑91 (MQ=255)

                                           cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                                               <  1:1874030/91‑1 (MQ=255)

                                             ttATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGa                                             <  1:3417348/91‑1 (MQ=255)

                                               aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa                                           >  1:2652616/1‑91 (MQ=255)

                                               aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa                                           >  1:164730/1‑91 (MQ=255)

                                               aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa                                           >  1:4094661/1‑91 (MQ=255)

                                                tGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagt                                          <  1:639395‑M2/91‑50 (MQ=255)

                                                 gATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaaga                                         >  1:4069176/1‑91 (MQ=255)

                                                   tataATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaagaag                                       >  1:3891109/1‑91 (MQ=255)

                                                   tataATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaagaag                                       <  1:495033/91‑1 (MQ=255)

                                                    ataataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAgg                                      <  1:1185749/91‑1 (MQ=255)

                                                    ataataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAgg                                      <  1:378505/91‑1 (MQ=255)

                                                     taataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctc                                     <  1:3250331‑M2/91‑55 (MQ=255)

                                                     taataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGc                                     >  1:2318795/1‑91 (MQ=255)

                                                     taataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGc                                     <  1:708772/91‑1 (MQ=255)

                                                      aataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCt                                    >  1:2397673/1‑91 (MQ=255)

                                                      aataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCt                                    <  1:43166/91‑1 (MQ=255)

                                                       ataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCtt                                   <  1:1923038/91‑1 (MQ=255)

                                                        taGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTa                                  <  1:3929035/91‑1 (MQ=255)

                                                        taGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTa                                  >  1:1908645/1‑91 (MQ=255)

                                                         aGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaa                                 <  1:3700306/91‑1 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaata                                <  1:3965778‑M2/91‑60 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaata                                <  1:3965532‑M2/91‑60 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa                                >  1:59654/1‑91 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa                                >  1:511921/1‑91 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa                                >  1:2429588/1‑91 (MQ=255)

                                                          ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa                                >  1:1180544/1‑91 (MQ=255)

                                                           gTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaatac                               <  1:548352‑M2/91‑61 (MQ=255)

                                                           gTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaaa                               <  1:839968/91‑1 (MQ=255)

                                                            tCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAAt                              >  1:3591950/1‑91 (MQ=255)

                                                            tCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAAt                              <  1:1087704/91‑1 (MQ=255)

                                                            tCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAAt                              >  1:3591697/1‑91 (MQ=255)

                                                             cGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATg                             >  1:1304230/1‑91 (MQ=255)

                                                               gTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAGTGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGat                           <  1:537954/91‑1 (MQ=255)

                                                               gTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGat                           <  1:538296/91‑1 (MQ=255)

                                                               gTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGat                           <  1:372812/91‑1 (MQ=255)

                                                                 tCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGatat                         <  1:3113968/91‑1 (MQ=255)

                                                                 tCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGatat                         <  1:3113970/91‑1 (MQ=255)

                                                                   aaaaCCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGatatat                       <  1:624657/91‑1 (MQ=255)

                                                                    aaaCCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGAtatata                      >  1:1620628/1‑91 (MQ=255)

                                                                    aaaCCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGAtatata                      >  1:1620644/1‑91 (MQ=255)

                                                                     aaCCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAg                     >  1:121728/1‑91 (MQ=255)

                                                                      aCCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGt                    <  1:67794/91‑1 (MQ=255)

                                                                         tttGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTAtt                 <  1:4097571/91‑1 (MQ=255)

                                                                             tgtTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAg             >  1:1635623/1‑91 (MQ=255)

                                                                                tCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGaaa          <  1:2851010/91‑1 (MQ=255)

                                                                                 cTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAAt         >  1:3658319/1‑91 (MQ=255)

                                                                                 cTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAAt         >  1:3597874/1‑91 (MQ=255)

                                                                                 cTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAAt         >  1:3598085/1‑91 (MQ=255)

                                                                                 cTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAAt         >  1:3598115/1‑91 (MQ=255)

                                                                                   tGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAg       <  1:3000587/91‑1 (MQ=255)

                                                                                     gccggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGaa     >  1:885052/1‑91 (MQ=255)

                                                                                      ccggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAg    <  1:2795079/91‑1 (MQ=255)

                                                                                        ggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAgcg  >  1:216751/1‑91 (MQ=255)

                                                                                        ggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAgcg  >  1:1053132/1‑91 (MQ=255)

                                                                                        ggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAgcg  <  1:815363/91‑1 (MQ=255)

                                                                                        ggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAgcg  >  1:2616440/1‑91 (MQ=255)

                                                                                        ggccTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAgcg  >  1:2616681/1‑91 (MQ=255)

GTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAATGATATATAGTATTACAGAAATAGAAGCG  >  USA300TCH1516_ALE/1383814‑1383992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.