BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1383873	91 (0.930)	6 (0.060)	5/154	NT	6.4%	intergenic (+90/‑90)	acnA/USA300HOU_RS06875	Aconitate hydratase A/Putative esterase
*	?	USA300TCH1516_ALE	= 1383903	88 (0.930)	6 (0.060)	5/154	NT	6.4%	intergenic (+120/‑60)	acnA/USA300HOU_RS06875	Aconitate hydratase A/Putative esterase

Only 100 of 126 total aligned reads displayed.

AAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAA  >  USA300TCH1516_ALE/1383783‑1383963

aaaaaTAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGG                                                                                            <  1:2745335‑M1/91‑1 (MQ=255)

   aaTAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCg                                                                                         >  1:1473210/1‑91 (MQ=255)

     tAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGt                                                                                       >  1:3042904/1‑91 (MQ=255)

     tAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGt                                                                                       <  1:3194787/91‑1 (MQ=255)

     tAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGt                                                                                       >  1:1906541/1‑91 (MQ=255)

     tAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTACTATAAACTTTATGATATAATAGGTCGGt                                                                                       >  1:3322976/1‑91 (MQ=255)

       gATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTc                                                                                     <  1:1648574/91‑1 (MQ=255)

       gATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTc                                                                                     <  1:2251531/91‑1 (MQ=255)

       gATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTc                                                                                     <  1:2251608/91‑1 (MQ=255)

         tatCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCaa                                                                                   <  1:3755375/91‑1 (MQ=255)

         tatCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCaa                                                                                   >  1:468771/1‑91 (MQ=255)

         tatCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCaa                                                                                   >  1:2099740/1‑91 (MQ=255)

         tatCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCaa                                                                                   <  1:1405060/91‑1 (MQ=255)

         tatCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCaa                                                                                   >  1:3434475/1‑91 (MQ=255)

                gTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCttt                                                                            >  1:1824561/1‑91 (MQ=255)

                   aaaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTtgtg                                                                         <  1:688345/91‑1 (MQ=255)

                   aaaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTtgtg                                                                         <  1:396172/91‑1 (MQ=255)

                    aaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTgtgt                                                                        >  1:1446633/1‑91 (MQ=255)

                    aaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTgtgt                                                                        <  1:592685/91‑1 (MQ=255)

                    aaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTgtgt                                                                        <  1:712142/91‑1 (MQ=255)

                    aaTTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTgtgt                                                                        <  1:3993296/91‑1 (MQ=255)

                      ttttAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATGAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTc                                                                      <  1:3596534/91‑1 (MQ=255)

                       tttAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCt                                                                     <  1:3053951/91‑1 (MQ=255)

                        ttAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGccggccaagaacacaaaggttttg                                                                    <  1:893101‑M1/91‑25 (MQ=255)

                        ttAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCtt                                                                    >  1:2826120/1‑91 (MQ=255)

                        ttAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCtt                                                                    >  1:4048967/1‑91 (MQ=255)

                          aaTCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTgg                                                                  >  1:2866761/1‑91 (MQ=255)

                          aaTCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTgg                                                                  >  1:3920238/1‑91 (MQ=255)

                          aaTCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTgg                                                                  >  1:1528566/1‑91 (MQ=255)

                          aaTCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTgg                                                                  >  1:3565919/1‑91 (MQ=255)

                           aTCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTggc                                                                 <  1:1248211/91‑1 (MQ=255)

                            tCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTggcc                                                                <  1:1040235/91‑1 (MQ=255)

                            tCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTggcc                                                                >  1:2483840/1‑91 (MQ=255)

                             cGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTggccg                                                               <  1:1545961/91‑1 (MQ=255)

                               gTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGccggccaagaacacaaaggttttgaaccgac                                                             <  1:548352‑M1/91‑32 (MQ=255)

                               gTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGc                                                             <  1:2361689‑M2/91‑2 (MQ=255)

                                tATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGccggccaagaacacaaaggttttgaaccgacc                                                            <  1:3965778‑M1/91‑33 (MQ=255)

                                tATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGccggccaagaacacaaaggttttgaaccgacc                                                            <  1:3965532‑M1/91‑33 (MQ=255)

                                 aTTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcct                                                           <  1:2728389‑M2/91‑4 (MQ=255)

                                   ttGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCctct                                                         <  1:2858251/91‑1 (MQ=255)

                                   ttGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGATTCAAAACCTTTGTGTTCTTGGCCGGCctct                                                         <  1:1333516/91‑1 (MQ=255)

                                    tGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCtctt                                                        <  1:1902725/91‑1 (MQ=255)

                                     gAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGccggccaagaacacaaaggttttgaaccgacctatta                                                       <  1:3250331‑M1/91‑38 (MQ=255)

                                        gCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTg                                                    >  1:3591562/1‑91 (MQ=255)

                                           cTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                 >  1:232797/1‑91 (MQ=255)

                                           cTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                 >  1:231498/1‑91 (MQ=255)

                                           cTTTGATAATGCTCAAAAATACCTCTATAAACTTTATGATTTAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAt                                                 <  1:1991867/91‑1 (MQ=255)

                                            tttGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAtt                                                <  1:1435249/91‑1 (MQ=255)

                                             ttGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAttt                                               >  1:3988162/1‑91 (MQ=255)

                                              tGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTAtttt                                              >  1:1340807/1‑91 (MQ=255)

                                               gATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTa                                             >  1:80761/1‑91 (MQ=255)

                                                  aGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGt                                          <  1:1584723/91‑1 (MQ=255)

                                                   gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                         >  1:1066920/1‑91 (MQ=255)

                                                   gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                         >  1:138637/1‑91 (MQ=255)

                                                   gTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGtt                                         >  1:138795/1‑91 (MQ=255)

                                                     gCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAg                                       >  1:3921187/1‑91 (MQ=255)

                                                     gCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAg                                       >  1:361233/1‑91 (MQ=255)

                                                         aaaaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATg                                   <  1:1944331/91‑1 (MQ=255)

                                                          aaaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATga                                  >  1:3145347/1‑91 (MQ=255)

                                                           aaaTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATgag                                 <  1:4096078/91‑1 (MQ=255)

                                                             aTACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGat                               <  1:1786902/91‑1 (MQ=255)

                                                              tACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGata                              >  1:2569389/1‑91 (MQ=255)

                                                               aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                             <  1:171953/91‑1 (MQ=255)

                                                               aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                             <  1:3742651/91‑1 (MQ=255)

                                                               aCTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGatat                             >  1:1097506/1‑91 (MQ=255)

                                                                 ttCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATaa                           <  1:3431853/91‑1 (MQ=255)

                                                                    tataAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGt                        <  1:1471938/91‑1 (MQ=255)

                                                                         aCTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAAc                   <  1:1118914/91‑1 (MQ=255)

                                                                          cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                  <  1:1728722/91‑1 (MQ=255)

                                                                          cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                  <  1:1874030/91‑1 (MQ=255)

                                                                          cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                  >  1:3042142/1‑91 (MQ=255)

                                                                          cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                  <  1:3719485/91‑1 (MQ=255)

                                                                          cTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACt                  >  1:2470689/1‑91 (MQ=255)

                                                                            ttATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGa                <  1:3417348/91‑1 (MQ=255)

                                                                              aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa              >  1:2652616/1‑91 (MQ=255)

                                                                              aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa              >  1:4094661/1‑91 (MQ=255)

                                                                              aTGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGaaa              >  1:164730/1‑91 (MQ=255)

                                                                               tGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagt             <  1:639395‑M2/91‑50 (MQ=255)

                                                                                gATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaaga            >  1:4069176/1‑91 (MQ=255)

                                                                                  tataATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaagaag          >  1:3891109/1‑91 (MQ=255)

                                                                                  tataATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAaagaag          <  1:495033/91‑1 (MQ=255)

                                                                                   ataataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAgg         <  1:378505/91‑1 (MQ=255)

                                                                                   ataataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAgg         <  1:1185749/91‑1 (MQ=255)

                                                                                   ataagaGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAgg         <  1:3459351/91‑1 (MQ=255)

                                                                                    taataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctc        <  1:3250331‑M2/91‑55 (MQ=255)

                                                                                    taataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGc        <  1:708772/91‑1 (MQ=255)

                                                                                     aataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCt       <  1:43166/91‑1 (MQ=255)

                                                                                     aataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCt       >  1:2397673/1‑91 (MQ=255)

                                                                                      ataGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCtt      <  1:1923038/91‑1 (MQ=255)

                                                                                       taGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTa     <  1:198348/91‑1 (MQ=255)

                                                                                       taGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTa     <  1:3929035/91‑1 (MQ=255)

                                                                                        aGGccggccaagaacacaaaggttttgaaccgacctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaat    <  1:2728389‑M1/91‑89 (MQ=255)

                                                                                         ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaata   <  1:3965778‑M2/91‑60 (MQ=255)

                                                                                         ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaata   <  1:3965532‑M2/91‑60 (MQ=255)

                                                                                         ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa   >  1:477629/1‑91 (MQ=255)

                                                                                         ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa   >  1:2429588/1‑91 (MQ=255)

                                                                                         ggTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaa   >  1:59654/1‑91 (MQ=255)

                                                                                          gccggccaagaacacaaaggttttgaaccgacctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaatac  <  1:2361689‑M1/91‑91 (MQ=255)

                                                                                          gTCGGTTCAAAACCTTTGTGTTCTTGGCCGGcctattatatcataaagtttatagaagtatttttgagcactatcaaagtgcctcaaatac  <  1:548352‑M2/91‑61 (MQ=255)

                                                                                          gTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTaaaa  <  1:839968/91‑1 (MQ=255)

AAAAATAGATATCACAGTAAAATTTTAATCGGTATTTGAGGCACTTTGATAGTGCTCAAAAATACTTCTATAAACTTTATGATATAATAGGTCGGTTCAAAACCTTTGTGTTCTTGGCCGGCCTCTTCTTGTATTTTATGTTAGAATGAGATATAAAGTTAAACTGAAAGAAGGCTTAAAA  >  USA300TCH1516_ALE/1383783‑1383963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.