| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1394937 | 92 (0.940) | 5 (0.060) | 5/132 | NT | 5.5% | intergenic (+17/‑464) | tqsA/mprF | AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase |
| ? | USA300TCH1516_ALE | = 1394951 | 95 (1.170) | intergenic (+31/‑450) | tqsA/mprF | AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase | |||||
CAATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1394834‑1394937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaataccaaCAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCATAGA < USA300TCH1516_ALE/1394951‑1394862 CAATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAA < 1:1419137/91‑1 AATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAAT > 1:1260338/1‑91 AATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAAT > 1:2313077/1‑91 AATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAAGAAGTAAT > 1:2065219/1‑91 ATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATA > 1:536323/1‑91 ATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATA > 1:534606/1‑91 ATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATA > 1:3138310/1‑91 TTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAA > 1:1206680/1‑91 TATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAA > 1:877553/1‑91 TTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAA < 1:91490/91‑1 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:1527312/1‑91 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:1527078/1‑91 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:572474/1‑91 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:572299/1‑91 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:2552447/1‑91 AACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATAC > 1:2886574/1‑91 CGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCA > 1:778660/1‑91 GTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAA < 1:2159209/91‑1 GTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAA < 1:1384521/91‑1 CGATACAATCGTCTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCgatg > 1:3207804/1‑87 GTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAACAAACATATAGTCATTGGTAT < 1:4009551/91‑1 ATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAACAAACATATAGTCATTGGTATTTT < 1:1548854/91‑1 ATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTA < 1:3228741/91‑1 TGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTAT < 1:3364294/91‑1 TAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTA < 1:1777493/91‑1 ATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACA < 1:1490776/91‑1 ATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACA < 1:1490635/91‑1 ATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACGTTCTTTAATATCATATTCACCTACA > 1:3865164/1‑91 ATAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACATTCTTTAATATCATATTCACCTACA > 1:3865185/1‑91 TAAAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACAT < 1:3661733/91‑1 TAAAAAACACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACAT < 1:2075596/91‑1 AAAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCA < 1:4092479/91‑1 AAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCAT > 1:4065639/1‑91 AAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCAT > 1:1027831/1‑91 AAAATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCAT > 1:3148740/1‑91 AATGCCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTA < 1:3267041/91‑1 AATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTA < 1:370757/91‑1 AATACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTA < 1:519461/91‑1 ACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCA > 1:2423754/1‑91 ACCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCA > 1:2339762/1‑91 CCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCAT < 1:43930/91‑1 CCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCAT > 1:2318603/1‑91 CCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCAT > 1:2317346/1‑91 CCAACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCAT < 1:2012061/91‑1 AACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCATAG > 1:1248748/1‑91 ACAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCATAGA > 1:2952434/1‑91 CAATTATTTAAACGTCGATACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1394834‑1394937‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaaataccaaCAAACATATAGTCATTGGTATTTTTTATTACTTATTCAACTATTTTATTACTTTCTTTAATATCATATTCACCTACATCATTACCATAGA < USA300TCH1516_ALE/1394951‑1394862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |