BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1394937	92 (0.940)	5 (0.060)	5/132	NT	5.5%	intergenic (+17/‑464)	tqsA/mprF	AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase
*	?	USA300TCH1516_ALE	= 1394951	95 (1.170)	5 (0.060)	5/132	NT	5.5%	intergenic (+31/‑450)	tqsA/mprF	AI‑2 transport protein TqsA/Phosphatidylglycerol lysyltransferase

Only 100 of 130 total aligned reads displayed.

TCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAG  >  USA300TCH1516_ALE/1394862‑1395041

tCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGt                                                                                           >  1:2952434‑M2/1‑90 (MQ=255)

 cTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGtt                                                                                          >  1:1248748‑M2/1‑89 (MQ=255)

   aTGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttgg                                                                                        >  1:2317346‑M2/1‑87 (MQ=255)

   aTGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttgg                                                                                        >  1:2318603‑M2/1‑87 (MQ=255)

   aTGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttgg                                                                                        <  1:43930‑M2/91‑5 (MQ=255)

   aTGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttgg                                                                                        <  1:2012061‑M2/91‑5 (MQ=255)

    tGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggt                                                                                       >  1:2339762‑M2/1‑86 (MQ=255)

    tGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggt                                                                                       >  1:2423754‑M2/1‑86 (MQ=255)

       tAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatt                                                                                    <  1:519461‑M2/91‑9 (MQ=255)

       tAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatt                                                                                    <  1:370757‑M2/91‑9 (MQ=255)

         atgatgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatttt                                                                                  >  1:3148740‑M2/1‑81 (MQ=255)

         atgatgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatttt                                                                                  >  1:1027831‑M2/1‑81 (MQ=255)

         atgatgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatttt                                                                                  >  1:4065639‑M2/1‑81 (MQ=255)

            atgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtgtttttta                                                                               <  1:2075596‑M2/91‑14 (MQ=255)

            atgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtatttttta                                                                               <  1:3661733‑M2/91‑14 (MQ=255)

             tgTAGGTGAATATGATATTAAAGAATGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtattttttat                                                                              >  1:3865185‑M2/1‑77 (MQ=255)

             tgTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGttggtattttttat                                                                              <  1:1490776‑M2/91‑15 (MQ=255)

              gTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATg                                                                             >  1:2126072/1‑91 (MQ=255)

                 ggTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTg                                                                          <  1:296552/91‑1 (MQ=255)

                  gTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGc                                                                         <  1:648095/91‑1 (MQ=255)

                   tGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCt                                                                        <  1:2659982/91‑1 (MQ=255)

                      atatGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTtat                                                                     <  1:1585685/91‑1 (MQ=255)

                       tatGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTtata                                                                    >  1:1990322/1‑91 (MQ=255)

                        atGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTGTATGTTTGTTGGTATTTTTTATGGTGCTTATaa                                                                   <  1:1134670/91‑1 (MQ=255)

                        atGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATaa                                                                   >  1:279446/1‑91 (MQ=255)

                         tGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAAt                                                                  >  1:2747036/1‑91 (MQ=255)

                          gATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATg                                                                 >  1:3665031/1‑91 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                <  1:3019561/91‑1 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                <  1:2887326/91‑1 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                >  1:3584801/1‑91 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                <  1:925954/91‑1 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                <  1:963166/91‑1 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                >  1:1678535/1‑91 (MQ=255)

                           atatTAAAGAAAGTAATAAAATAATTGAATAAGAAATAAAAAATACCAATGACTATATGATTGTTGGTATTTTTTATGGTGCTTATAATGt                                                                >  1:3313888/1‑91 (MQ=255)

                            tatTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGtt                                                               >  1:2759015/1‑91 (MQ=255)

                                aaagtaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGc                                                           <  1:3452244/91‑1 (MQ=255)

                                 aagaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCa                                                          >  1:523373/1‑91 (MQ=255)

                                  agaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAg                                                         <  1:2814171/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:2762621/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:332151/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:4032979/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:2761932/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:1963460/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:1963580/91‑1 (MQ=255)

                                   gaaagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGt                                                        <  1:2513629/91‑1 (MQ=255)

                                     aagTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTa                                                      <  1:1743233/91‑1 (MQ=255)

                                      agTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTAc                                                     >  1:2976221/1‑91 (MQ=255)

                                      agTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTAc                                                     >  1:3715747/1‑91 (MQ=255)

                                       gTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACa                                                    >  1:1831223/1‑91 (MQ=255)

                                          ataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAttt                                                 >  1:888468/1‑91 (MQ=255)

                                          ataaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACAttt                                                 <  1:1296570/91‑1 (MQ=255)

                                           taaAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTa                                                <  1:4134825/91‑1 (MQ=255)

                                             aaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATg                                              >  1:2743035/1‑91 (MQ=255)

                                             aaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATg                                              >  1:649629/1‑91 (MQ=255)

                                             aaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATg                                              <  1:1381233/91‑1 (MQ=255)

                                             aaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATg                                              >  1:650607/1‑91 (MQ=255)

                                             aaaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATg                                              <  1:1381262/91‑1 (MQ=255)

                                              aaTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGa                                             <  1:3923380/91‑1 (MQ=255)

                                               aTAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGAt                                            <  1:610644/91‑1 (MQ=255)

                                                 aGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTa                                          >  1:1197969/1‑91 (MQ=255)

                                                     gAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAg                                      >  1:3908924/1‑91 (MQ=255)

                                                     gAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAg                                      <  1:1864420/91‑1 (MQ=255)

                                                     gAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAg                                      >  1:2694124/1‑91 (MQ=255)

                                                       aTAAGTAATTAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGca                                    <  1:3985234/91‑1 (MQ=255)

                                                       aTAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGca                                    <  1:597480/91‑1 (MQ=255)

                                                        tAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGcac                                   <  1:3917428/91‑1 (MQ=255)

                                                          aGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACAt                                 <  1:3641975/91‑1 (MQ=255)

                                                           gTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATg                                >  1:4027983/1‑91 (MQ=255)

                                                            taataaAAAATACCAATGACTATATGTTTGttggtattttttattacttattcaactattttattactttctttaatatcatattcaccta                               <  1:1777493‑M2/91‑62 (MQ=255)

                                                            taataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGt                               <  1:3572652/91‑1 (MQ=255)

                                                            taataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGt                               >  1:657453/1‑91 (MQ=255)

                                                              ataaAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGttt                             >  1:2473357/1‑91 (MQ=255)

                                                               taaAAAATACCAATGACTATATGTTTGttggtattttttattacttattcaactattttattactttctttaatatcatattcacctacat                            <  1:3228741‑M2/91‑65 (MQ=255)

                                                                aaaaaaTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAg                           >  1:3686008/1‑91 (MQ=255)

                                                                aaaaaaTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAg                           >  1:3686010/1‑91 (MQ=255)

                                                                 aaaaaTACCAATGACTAGATGTTTGTTGGTATATTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGc                          <  1:3553533/91‑1 (MQ=255)

                                                                  aaaaTACCAATGACTATATGTTTGttggtattttttattacttattcaactattttattactttctttaatatcatattcacctacatcat                         <  1:1548854‑M2/91‑68 (MQ=255)

                                                                  aaaaTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCt                         <  1:2058233/91‑1 (MQ=255)

                                                                   aaaTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCtt                        >  1:3465861/1‑91 (MQ=255)

                                                                    aaTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTta                       >  1:410424/1‑91 (MQ=255)

                                                                     aTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtat                      >  1:3764157/1‑91 (MQ=255)

                                                                     aTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtat                      <  1:1492191/91‑1 (MQ=255)

                                                                     aTACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTtat                      <  1:2310737/91‑1 (MQ=255)

                                                                        ccAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATaaa                   >  1:2459737/1‑91 (MQ=255)

                                                                         cAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAt                  >  1:1320629/1‑91 (MQ=255)

                                                                         cAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAt                  >  1:2593806/1‑91 (MQ=255)

                                                                         cAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTACCTTATAAAt                  >  1:3963478/1‑91 (MQ=255)

                                                                          aaTGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAtt                 <  1:1891415/91‑1 (MQ=255)

                                                                           aTGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAttt                >  1:2868248/1‑91 (MQ=255)

                                                                            tGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAtttt               >  1:1039183/1‑91 (MQ=255)

                                                                            tGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAAtttt               >  1:1038783/1‑91 (MQ=255)

                                                                            tGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTACAAAtttt               >  1:2073339/1‑91 (MQ=255)

                                                                               cTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTAc            <  1:1657730/91‑1 (MQ=255)

                                                                                 atatGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGa          <  1:2620020/91‑1 (MQ=255)

                                                                                   atGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGaaa        >  1:544904/1‑91 (MQ=255)

                                                                                    tgtttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAg       >  1:617866/1‑91 (MQ=255)

                                                                                     gtttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGt      <  1:4070674/91‑1 (MQ=255)

                                                                                      tttgttGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGtt     <  1:335202/91‑1 (MQ=255)

                                                                                       ttgttgGTATTTTTTATGGTGCTTATAATGTTGCGCAGTTACATTTATGATTATCAGCATATGTTTAGCTTATAAATTTTTACGAAAGttt    <  1:3690426/91‑1 (MQ=255)

                                                                                         gttgGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAg  >  1:1961847/1‑91 (MQ=255)

TCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATAGTTGAATAAGTAATAAAAAATACCAATGACTATATGTTTGTTGGTATTTTTTATGGTGCTTATAATGTTGGGCAGTTACATTTATGATTATCAGCACATGTTTAGCTTATAAATTTTTACGAAAGTTTAG  >  USA300TCH1516_ALE/1394862‑1395041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.