| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1414391 = | 84 (0.850) | 7 (0.080) | 4/150 | NT | 9.2% | coding (170/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU |
| ? | USA300TCH1516_ALE | 1414420 = | 60 (0.650) | coding (199/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU | |||||
GATATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1414485‑1414391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT > USA300TCH1516_ALE/1414420‑1414506 GATATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTG < 1:1609765/91‑1GATATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTG > 1:3827901/1‑91GATATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTG > 1:3827900/1‑91 TATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTG < 1:3580987/91‑1 ATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGC > 1:1325733/1‑91 TGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGCT < 1:1079094/91‑1 TGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGCT > 1:353258/1‑91 TGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGAATGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGCT > 1:4138334/1‑91 ATAGCACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATAGATATCAT > 1:2070326/1‑91 ATAGCACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATAGATATCAT > 1:2072274/1‑91 AGCACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCA > 1:1829731/1‑91 AGCACCATTTGCGCCAATTAATGTGTGCTAAGATTTCACAGCAATCAAAGATATCTGTTAACAAACCAATTCATACTGATAAATATCATCA > 1:1784641/1‑91 GCACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCAT > 1:737605/1‑91 GCACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCAT > 1:737533/1‑91 ACCATTTGCGCCAATTAATGTGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCTTACTGATACATATCATCATAT > 1:2785537/1‑91 GTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTA > 1:1073668/1‑91 TGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT > 1:401737/1‑91 TGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT < 1:2353260/91‑1 TGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT < 1:1659844/91‑1 GATATGATGATATGTATCAGTATGAATTGGTTTGATAACAGAAATCTTTGATTGCTGTGAAATCATAGCACCATTTGCGCCAATTAATGTGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1414485‑1414391‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT > USA300TCH1516_ALE/1414420‑1414506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |