| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1414391 = | 84 (0.850) | 7 (0.080) | 4/150 | NT | 9.2% | coding (170/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU |
| ? | USA300TCH1516_ALE | 1414420 = | 60 (0.650) | coding (199/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU | |||||
ATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT > USA300TCH1516_ALE/1414330‑1414506 | atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa > 1:3854285/1‑91 (MQ=255)atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa < 1:2241965/91‑1 (MQ=255) tatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTAt < 1:2674632/91‑1 (MQ=255) atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt > 1:2070326‑M1/61‑91 (MQ=255) atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt > 1:2072274‑M1/61‑91 (MQ=255) atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATg < 1:1066191/91‑1 (MQ=255) atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCACTTTTACCATCAGTCTTTCATCAGCACAGATTAATTGGCGCAAATGGTCCTATg > 1:3858648/1‑91 (MQ=255) tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa < 1:4023473/91‑1 (MQ=255) tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa > 1:2609967/1‑91 (MQ=255) tGCATGAGCACGTCCGATTCGTGATGTGTTGCCAGTTTTGCCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGAtt < 1:3851139/91‑1 (MQ=255) gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc > 1:2866479/1‑91 (MQ=255) gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc < 1:3575857/91‑1 (MQ=255) gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc > 1:2866192/1‑91 (MQ=255) cGTCCGATTGGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3971781/91‑1 (MQ=255) cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3654456/91‑1 (MQ=255) cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3427901/91‑1 (MQ=255) gTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATc > 1:1578496/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa > 1:2889424/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa > 1:2889411/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGAAATct < 1:1463960/91‑2 (MQ=255) ttCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAt < 1:2140936/91‑1 (MQ=255) cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt < 1:698567/91‑1 (MQ=255) cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt < 1:698685/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt < 1:468402/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt > 1:1401926/1‑91 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt < 1:968919/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt < 1:2834739/91‑1 (MQ=255) gATTTGTTGCCAGTTTTACCATCAGTATTTCGTCAGCACACATTGATTGGCGCGAATCGTGCTATGATTTCACAGCAATCAAAGATTTCTg < 1:3308914/91‑1 (MQ=255) gATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTg < 1:3962157/91‑1 (MQ=255) tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt > 1:2195370/1‑91 (MQ=255) tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt > 1:1272717/1‑91 (MQ=255) tgttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTAt < 1:498891/91‑1 (MQ=255) gttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATc > 1:93958/1‑91 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:571392/91‑1 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:4048882/91‑1 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:4048118/91‑1 (MQ=255) ccAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAc > 1:2652921/1‑91 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:3036690/91‑1 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:2972271/91‑1 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:3033634/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:654531/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:654322/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:2895660/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:1782319/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAAcc < 1:3543570/91‑1 (MQ=255) aGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCa < 1:519604/91‑1 (MQ=255) ttACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTc < 1:1284374/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450527/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450469/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2709926/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450499/91‑1 (MQ=255) aCCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCAt > 1:3093799/1‑91 (MQ=255) aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt > 1:1331926/1‑91 (MQ=255) aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt > 1:567174/1‑91 (MQ=255) tCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTg < 1:2593680/91‑1 (MQ=255) gTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATa < 1:1761085/91‑1 (MQ=255) aTTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACa < 1:1179276/91‑1 (MQ=255) tttCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAACCAATTCATACTGATACat > 1:3539590/1‑91 (MQ=255) atcaGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatca < 1:3825413/91‑1 (MQ=255) atagcaccatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATAGATatcat > 1:2072274‑M2/32‑91 (MQ=255) atagcaccatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATAGATatcat > 1:2070326‑M2/32‑91 (MQ=255) caGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatcatc < 1:2825132/91‑1 (MQ=255) agcaccatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca > 1:1829731‑M2/30‑91 (MQ=255) agcaccatttgcgccaattaatgtgtgctAAGATTTCACAGCAATCAAAGATATCTGTTAACAAACCAATTCATACTGATAAATAtcatca > 1:1784641‑M2/30‑91 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCATTCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca > 1:4138334‑M1/1‑91 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca < 1:1079094‑M1/91‑1 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca > 1:353258‑M1/1‑91 (MQ=255) gcaccatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATcatcat > 1:737605‑M2/29‑91 (MQ=255) gcaccatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATcatcat > 1:737533‑M2/29‑91 (MQ=255) GCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATcatcat > 1:1325733‑M1/1‑91 (MQ=255) CACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCata < 1:3580987‑M1/91‑1 (MQ=255) accatttgcgccaattaatgtgtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCTTACTGATACATATCATCatat > 1:2785537‑M2/27‑91 (MQ=255) CACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATc > 1:3827901‑M1/1‑91 (MQ=255) CACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATc > 1:3827900‑M1/1‑91 (MQ=255) CACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATc < 1:1609765‑M1/91‑1 (MQ=255) acaTTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCt < 1:3582534/91‑1 (MQ=255) acaTTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCt < 1:3270188/91‑1 (MQ=255) aTTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTc > 1:3488311/1‑91 (MQ=255) aaTTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCaaa < 1:2599993/91‑1 (MQ=255) cgcAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAAtt > 1:1711130/1‑91 (MQ=255) cgcAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAAtt > 1:3521050/1‑91 (MQ=255) cgcAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAAtt > 1:3520807/1‑91 (MQ=255) cgcAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAAtt > 1:2645206/1‑91 (MQ=255) cAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCa > 1:329347/1‑91 (MQ=255) tGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAg > 1:1159871/1‑91 (MQ=255) gtgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTa > 1:1073668‑M2/6‑91 (MQ=255) tgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAt < 1:1659844‑M2/87‑1 (MQ=255) tgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAt > 1:401737‑M2/5‑91 (MQ=255) tgctATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAt < 1:2353260‑M2/87‑1 (MQ=255) | ATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCATATCTTCAAAATAATTCAAAAGTAT > USA300TCH1516_ALE/1414330‑1414506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |