New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 1414391 = | 84 (0.850) | 7 (0.080) | 4/150 | NT | 9.2% | coding (170/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU |
? | USA300TCH1516_ALE | 1414420 = | 60 (0.650) | coding (199/768 nt) | yitU_2 | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU |
Only 100 of 108 total aligned reads displayed.
ACAATTACAACATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCA > USA300TCH1516_ALE/1414302‑1414481 | acaattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAg > 1:1802775/1‑91 (MQ=255) atacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGca < 1:2353260‑M1/4‑1 (MQ=255) atacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGca < 1:1659844‑M1/4‑1 (MQ=255) aattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGca < 1:870882/91‑1 (MQ=255) aattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGca < 1:868303/91‑1 (MQ=255) tacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGcac > 1:1073668‑M1/87‑91 (MQ=255) attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac > 1:76625/1‑91 (MQ=255) attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac > 1:3705378/1‑91 (MQ=255) attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac < 1:3717546/91‑1 (MQ=255) attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac < 1:1664905/91‑1 (MQ=255) attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac > 1:379131/1‑91 (MQ=255) acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca < 1:2475758/91‑1 (MQ=255) acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca < 1:2469145/91‑1 (MQ=255) acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca < 1:871277/91‑1 (MQ=255) caacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACAt < 1:2241922/91‑1 (MQ=255) aacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACAtt < 1:3508695/91‑1 (MQ=255) atgatgGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAAt > 1:2968938/1‑91 (MQ=255) gatgGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTg < 1:2052121/91‑1 (MQ=255) ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcg > 1:1797261/1‑91 (MQ=255) ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcg < 1:3875805/91‑1 (MQ=255) ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTACCAGTTTTACCATCAGTATTTCATCAGCAGACATTAATTGgcg > 1:4148208/1‑91 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCGGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc > 1:2363582/1‑91 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc < 1:4051345/91‑1 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc < 1:3408745/91‑1 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc > 1:3301354/1‑91 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc > 1:2362280/1‑91 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc < 1:4051421/91‑1 (MQ=255) gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc < 1:4051249/91‑1 (MQ=255) cATGAACTTATATTTGCATCAGCACGTCCGATTCGTGCTTTGTTGCTAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCaa > 1:3316117/1‑91 (MQ=255) aTGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCaaa > 1:3470563/1‑91 (MQ=255) tGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCGAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAAt < 1:3308529/91‑1 (MQ=255) gAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATg > 1:3261932/1‑91 (MQ=255) aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg < 1:1603739/91‑1 (MQ=255) aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg > 1:82782/1‑91 (MQ=255) aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg < 1:905359/91‑1 (MQ=255) atatgatgatatgtatcagtaagaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGt > 1:2785537‑M1/66‑91 (MQ=255) cTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTg < 1:2503916/91‑1 (MQ=255) ttATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGc < 1:3874760/91‑1 (MQ=255) atgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGc > 1:737533‑M1/64‑91 (MQ=255) atgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGc > 1:737605‑M1/64‑91 (MQ=255) tgatgatatttatcagtatgaattggtttgttaacagatatctttgattgctgtgaaatcttAGCACACATTAATTGGCGCAAATGGTGCt > 1:1784641‑M1/63‑91 (MQ=255) tgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCt > 1:1829731‑M1/63‑91 (MQ=255) tataTTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCt > 1:3118838/1‑91 (MQ=255) atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa < 1:2241965/91‑1 (MQ=255) atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa > 1:3854285/1‑91 (MQ=255) tatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTAt < 1:2674632/91‑1 (MQ=255) atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt > 1:2070326‑M1/61‑91 (MQ=255) atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt > 1:2072274‑M1/61‑91 (MQ=255) atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATg < 1:1066191/91‑1 (MQ=255) atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCACTTTTACCATCAGTCTTTCATCAGCACAGATTAATTGGCGCAAATGGTCCTATg > 1:3858648/1‑91 (MQ=255) tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa > 1:2609967/1‑91 (MQ=255) tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa < 1:4023473/91‑1 (MQ=255) tGCATGAGCACGTCCGATTCGTGATGTGTTGCCAGTTTTGCCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGAtt < 1:3851139/91‑1 (MQ=255) gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc > 1:2866479/1‑91 (MQ=255) gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc > 1:2866192/1‑91 (MQ=255) cGTCCGATTGGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3971781/91‑1 (MQ=255) cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3654456/91‑1 (MQ=255) cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt < 1:3427901/91‑1 (MQ=255) gTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATc > 1:1578496/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa > 1:2889424/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa > 1:2889411/1‑91 (MQ=255) tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGAAATct < 1:1463960/91‑2 (MQ=255) ttCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAt < 1:2140936/91‑1 (MQ=255) cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt < 1:698567/91‑1 (MQ=255) cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt < 1:698685/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt < 1:2834739/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt < 1:468402/91‑1 (MQ=255) tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt > 1:1401926/1‑91 (MQ=255) gATTTGTTGCCAGTTTTACCATCAGTATTTCGTCAGCACACATTGATTGGCGCGAATCGTGCTATGATTTCACAGCAATCAAAGATTTCTg < 1:3308914/91‑1 (MQ=255) gATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTg < 1:3962157/91‑1 (MQ=255) tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt > 1:2195370/1‑91 (MQ=255) tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt > 1:1272717/1‑91 (MQ=255) tgttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTAt < 1:498891/91‑1 (MQ=255) gttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATc > 1:93958/1‑91 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:4048118/91‑1 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:4048882/91‑1 (MQ=255) gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa < 1:571392/91‑1 (MQ=255) ccAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAc > 1:2652921/1‑91 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:3036690/91‑1 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:3033634/91‑1 (MQ=255) cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:2972271/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:654531/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:2895660/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc < 1:1782319/91‑1 (MQ=255) cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAAcc < 1:3543570/91‑1 (MQ=255) aGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCa < 1:519604/91‑1 (MQ=255) ttACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTc < 1:1284374/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450469/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450499/91‑1 (MQ=255) tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa < 1:2450527/91‑1 (MQ=255) aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt > 1:567174/1‑91 (MQ=255) aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt > 1:1331926/1‑91 (MQ=255) tCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTg < 1:2593680/91‑1 (MQ=255) aTTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACa < 1:1179276/91‑1 (MQ=255) tttCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAACCAATTCATACTGATACat > 1:3539590/1‑91 (MQ=255) atcaGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatca < 1:3825413/91‑1 (MQ=255) caGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatcatc < 1:2825132/91‑1 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCATTCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca > 1:4138334‑M1/1‑91 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca > 1:353258‑M1/1‑91 (MQ=255) AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca < 1:1079094‑M1/91‑1 (MQ=255) | ACAATTACAACATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCA > USA300TCH1516_ALE/1414302‑1414481 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |