New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1414391 =84 (0.850)7 (0.080) 4/150 NT 9.2% coding (170/768 nt) yitU_2 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU
?USA300TCH1516_ALE 1414420 = 60 (0.650)coding (199/768 nt) yitU_2 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase YitU

Only 100 of 108 total aligned reads displayed.

ACAATTACAACATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCA  >  USA300TCH1516_ALE/1414302‑1414481
                                                                                         |                                                                                          
acaattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAg                                                                                           >  1:1802775/1‑91 (MQ=255)
  atacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGca                                                                                         <  1:2353260‑M1/4‑1 (MQ=255)
  atacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGca                                                                                         <  1:1659844‑M1/4‑1 (MQ=255)
  aattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGca                                                                                         <  1:870882/91‑1 (MQ=255)
  aattacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGca                                                                                         <  1:868303/91‑1 (MQ=255)
   tacttttgaattattttgaagatatgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGcac                                                                                        >  1:1073668‑M1/87‑91 (MQ=255)
   attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac                                                                                        >  1:76625/1‑91 (MQ=255)
   attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac                                                                                        >  1:3705378/1‑91 (MQ=255)
   attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac                                                                                        <  1:3717546/91‑1 (MQ=255)
   attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac                                                                                        <  1:1664905/91‑1 (MQ=255)
   attacaaCATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcac                                                                                        >  1:379131/1‑91 (MQ=255)
      acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca                                                                                     <  1:2475758/91‑1 (MQ=255)
      acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca                                                                                     <  1:2469145/91‑1 (MQ=255)
      acaacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGcacaca                                                                                     <  1:871277/91‑1 (MQ=255)
       caacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACAt                                                                                    <  1:2241922/91‑1 (MQ=255)
        aacaTGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACAtt                                                                                   <  1:3508695/91‑1 (MQ=255)
           atgatgGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAAt                                                                                >  1:2968938/1‑91 (MQ=255)
             gatgGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTg                                                                              <  1:2052121/91‑1 (MQ=255)
                ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcg                                                                           >  1:1797261/1‑91 (MQ=255)
                ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcg                                                                           <  1:3875805/91‑1 (MQ=255)
                ggTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTACCAGTTTTACCATCAGTATTTCATCAGCAGACATTAATTGgcg                                                                           >  1:4148208/1‑91 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCGGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          >  1:2363582/1‑91 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          <  1:4051345/91‑1 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          <  1:3408745/91‑1 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          >  1:3301354/1‑91 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          >  1:2362280/1‑91 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          <  1:4051421/91‑1 (MQ=255)
                 gTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGgcgc                                                                          <  1:4051249/91‑1 (MQ=255)
                   cATGAACTTATATTTGCATCAGCACGTCCGATTCGTGCTTTGTTGCTAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCaa                                                                        >  1:3316117/1‑91 (MQ=255)
                    aTGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCaaa                                                                       >  1:3470563/1‑91 (MQ=255)
                     tGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCGAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAAt                                                                      <  1:3308529/91‑1 (MQ=255)
                      gAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATg                                                                     >  1:3261932/1‑91 (MQ=255)
                       aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg                                                                    <  1:1603739/91‑1 (MQ=255)
                       aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg                                                                    >  1:82782/1‑91 (MQ=255)
                       aaCTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATgg                                                                    <  1:905359/91‑1 (MQ=255)
                        atatgatgatatgtatcagtaagaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGt                                                                   >  1:2785537‑M1/66‑91 (MQ=255)
                         cTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTg                                                                  <  1:2503916/91‑1 (MQ=255)
                          ttATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGc                                                                 <  1:3874760/91‑1 (MQ=255)
                          atgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGc                                                                 >  1:737533‑M1/64‑91 (MQ=255)
                          atgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGc                                                                 >  1:737605‑M1/64‑91 (MQ=255)
                           tgatgatatttatcagtatgaattggtttgttaacagatatctttgattgctgtgaaatcttAGCACACATTAATTGGCGCAAATGGTGCt                                                                >  1:1784641‑M1/63‑91 (MQ=255)
                           tgatgatatgtatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCt                                                                >  1:1829731‑M1/63‑91 (MQ=255)
                           tataTTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCt                                                                >  1:3118838/1‑91 (MQ=255)
                            atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa                                                               <  1:2241965/91‑1 (MQ=255)
                            atatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTa                                                               >  1:3854285/1‑91 (MQ=255)
                             tatTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTAt                                                              <  1:2674632/91‑1 (MQ=255)
                             atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt                                                              >  1:2070326‑M1/61‑91 (MQ=255)
                             atgatatctatcagtatgaattggtttgataacagaaatctttgattgctgtgaaatcatAGCACACATTAATTGGCGCAAATGGTGCTAt                                                              >  1:2072274‑M1/61‑91 (MQ=255)
                              atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATg                                                             <  1:1066191/91‑1 (MQ=255)
                              atTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCACTTTTACCATCAGTCTTTCATCAGCACAGATTAATTGGCGCAAATGGTCCTATg                                                             >  1:3858648/1‑91 (MQ=255)
                               tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa                                                            >  1:2609967/1‑91 (MQ=255)
                               tttGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGa                                                            <  1:4023473/91‑1 (MQ=255)
                                 tGCATGAGCACGTCCGATTCGTGATGTGTTGCCAGTTTTGCCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGAtt                                                          <  1:3851139/91‑1 (MQ=255)
                                        gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc                                                   >  1:2866479/1‑91 (MQ=255)
                                        gCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGc                                                   >  1:2866192/1‑91 (MQ=255)
                                           cGTCCGATTGGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt                                                <  1:3971781/91‑1 (MQ=255)
                                           cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt                                                <  1:3654456/91‑1 (MQ=255)
                                           cGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAAt                                                <  1:3427901/91‑1 (MQ=255)
                                            gTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATc                                               >  1:1578496/1‑91 (MQ=255)
                                             tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa                                              >  1:2889424/1‑91 (MQ=255)
                                             tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCa                                              >  1:2889411/1‑91 (MQ=255)
                                             tCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGAAATct                                              <  1:1463960/91‑2 (MQ=255)
                                                  ttCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAt                                         <  1:2140936/91‑1 (MQ=255)
                                                    cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt                                       <  1:698567/91‑1 (MQ=255)
                                                    cGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGAttt                                       <  1:698685/91‑1 (MQ=255)
                                                      tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt                                     <  1:2834739/91‑1 (MQ=255)
                                                      tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt                                     <  1:468402/91‑1 (MQ=255)
                                                      tGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCt                                     >  1:1401926/1‑91 (MQ=255)
                                                       gATTTGTTGCCAGTTTTACCATCAGTATTTCGTCAGCACACATTGATTGGCGCGAATCGTGCTATGATTTCACAGCAATCAAAGATTTCTg                                    <  1:3308914/91‑1 (MQ=255)
                                                       gATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTg                                    <  1:3962157/91‑1 (MQ=255)
                                                         tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt                                  >  1:2195370/1‑91 (MQ=255)
                                                         tttGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGtt                                  >  1:1272717/1‑91 (MQ=255)
                                                           tgttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTAt                                <  1:498891/91‑1 (MQ=255)
                                                            gttgCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATc                               >  1:93958/1‑91 (MQ=255)
                                                               gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa                            <  1:4048118/91‑1 (MQ=255)
                                                               gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa                            <  1:4048882/91‑1 (MQ=255)
                                                               gCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCaaa                            <  1:571392/91‑1 (MQ=255)
                                                                ccAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAc                           >  1:2652921/1‑91 (MQ=255)
                                                                 cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:3036690/91‑1 (MQ=255)
                                                                 cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:3033634/91‑1 (MQ=255)
                                                                 cAGTTTTACTATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:2972271/91‑1 (MQ=255)
                                                                 cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:654531/91‑1 (MQ=255)
                                                                 cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:2895660/91‑1 (MQ=255)
                                                                 cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAAcc                          <  1:1782319/91‑1 (MQ=255)
                                                                 cAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAAcc                          <  1:3543570/91‑1 (MQ=255)
                                                                  aGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCa                         <  1:519604/91‑1 (MQ=255)
                                                                      ttACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTc                     <  1:1284374/91‑1 (MQ=255)
                                                                       tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa                    <  1:2450469/91‑1 (MQ=255)
                                                                       tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa                    <  1:2450499/91‑1 (MQ=255)
                                                                       tACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCa                    <  1:2450527/91‑1 (MQ=255)
                                                                           aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt                >  1:567174/1‑91 (MQ=255)
                                                                           aTCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACt                >  1:1331926/1‑91 (MQ=255)
                                                                            tCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTg               <  1:2593680/91‑1 (MQ=255)
                                                                                 aTTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACa          <  1:1179276/91‑1 (MQ=255)
                                                                                  tttCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGACTTCTGTTATCAAACCAATTCATACTGATACat         >  1:3539590/1‑91 (MQ=255)
                                                                                      atcaGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatca     <  1:3825413/91‑1 (MQ=255)
                                                                                        caGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATatcatc   <  1:2825132/91‑1 (MQ=255)
                                                                                         AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCATTCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca  >  1:4138334‑M1/1‑91 (MQ=255)
                                                                                         AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca  >  1:353258‑M1/1‑91 (MQ=255)
                                                                                         AGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATAtcatca  <  1:1079094‑M1/91‑1 (MQ=255)
                                                                                         |                                                                                          
ACAATTACAACATGATGGTCATGAACTTATATTTGCATCAGCACGTCCGATTCGTGATTTGTTGCCAGTTTTACCATCAGTATTTCATCAGCACACATTAATTGGCGCAAATGGTGCTATGATTTCACAGCAATCAAAGATTTCTGTTATCAAACCAATTCATACTGATACATATCATCA  >  USA300TCH1516_ALE/1414302‑1414481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.