| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1439024 | 116 (1.180) | 12 (0.130) | 7/146 | NT | 10.3% | intergenic (+22/+218) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1439047 | 104 (1.160) | intergenic (+45/+195) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1438928‑1439024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccgaGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTCG < USA300TCH1516_ALE/1439047‑1438961 TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAAT > 1:3567642/1‑91 TAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATC > 1:2020327/1‑91 AAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCC < 1:3158182/91‑1 AAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCC > 1:3042170/1‑91 AAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCC > 1:1964232/1‑91 TTATAAATCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACTAAGTAATCCCCGAGTCACAGTATAATTTTCTG < 1:4113995/91‑1 TATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGT < 1:2491299/91‑1 ATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTTTAATTTTCTGTG < 1:3196278/91‑1 ATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTG < 1:3205343/91‑1 ATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTG < 1:2611755/91‑1 AAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTGCTT < 1:1132675/91‑1 AAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTGCTT < 1:1133202/91‑1 GCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTGCTTCG < 1:3980929/91‑1 GACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:1987330/91‑1 GACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:1987328/91‑1 GACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:2896935/91‑1 AGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGT < 1:1407115/91‑1 TCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTG > 1:2185383/1‑91 TCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTG > 1:2185532/1‑91 TCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTG > 1:2535430/1‑91 TCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTG < 1:1094702/91‑1 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTC > 1:1953285/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTC > 1:1953174/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTC > 1:1953138/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTC < 1:1635212/91‑1 CCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTCG > 1:390260/1‑91 CCGAGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTCG > 1:390261/1‑91 TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1438928‑1439024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccgaGTCACAGTATAATTTTCTGTGCTTCGGGGATTACTTTGTTTATTTTTATTTTGTATCATTAATAATGAGTTGTCTTAACGATTGTCG < USA300TCH1516_ALE/1439047‑1438961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |