BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1439024	116 (1.180)	12 (0.130)	7/146	NT	10.3%	intergenic (+22/+218)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1439047	104 (1.160)	12 (0.130)	7/146	NT	10.3%	intergenic (+45/+195)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 169 total aligned reads displayed.

TGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGA  >  USA300TCH1516_ALE/1438936‑1439114

tGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAg                                                                                          <  1:1444059/91‑1 (MQ=255)

 ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc                                                                                         <  1:3828653/91‑1 (MQ=255)

  gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca                                                                                        >  1:3435680/1‑91 (MQ=255)

  gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca                                                                                        <  1:3524560/91‑1 (MQ=255)

  gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca                                                                                        >  1:3178749/1‑91 (MQ=255)

  gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca                                                                                        <  1:3176812/91‑1 (MQ=255)

   cAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcac                                                                                       >  1:1157484/1‑91 (MQ=255)

     aaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAg                                                                                     >  1:1723021/1‑91 (MQ=255)

      aGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGa                                                                                    >  1:1239255/1‑91 (MQ=255)

      aGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGa                                                                                    >  1:2122758/1‑91 (MQ=255)

         aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa                                                                                 <  1:2767606/91‑1 (MQ=255)

         aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa                                                                                 >  1:132143/1‑91 (MQ=255)

         aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa                                                                                 <  1:2185217/91‑1 (MQ=255)

         aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa                                                                                 <  1:2337615/91‑1 (MQ=255)

         aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa                                                                                 <  1:1806751/91‑1 (MQ=255)

          cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt                                                                                <  1:1152256/91‑1 (MQ=255)

                gTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACt                                                                          <  1:1846926/91‑1 (MQ=255)

                gTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACt                                                                          <  1:3272651/91‑1 (MQ=255)

                 ttATAAATCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACTAAGTAATCCCCGAgtcacagtataattttctg                                                                         <  1:4113995‑M1/91‑20 (MQ=255)

                 ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtg                                                                         >  1:2033394/1‑91 (MQ=255)

                   ataAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtg                                                                       <  1:3205343‑M1/91‑22 (MQ=255)

                    taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATACAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGa                                                                      >  1:3304691/1‑91 (MQ=255)

                     aaaGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGAc                                                                     <  1:3700634/91‑1 (MQ=255)

                      aaGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgctt                                                                    <  1:1132675‑M1/91‑25 (MQ=255)

                         cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg                                                                 >  1:390260‑M2/1‑87 (MQ=255)

                         cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg                                                                 >  1:390261‑M2/1‑87 (MQ=255)

                          gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTATTCCCCGAgtcacagtataattttctgtgcttcggg                                                                <  1:1987328‑M1/91‑29 (MQ=255)

                          gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgcttcggg                                                                <  1:2896935‑M1/91‑29 (MQ=255)

                          gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                <  1:1635212‑M2/91‑6 (MQ=255)

                            cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                              <  1:1094702‑M2/91‑8 (MQ=255)

                             aaTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGaa                                                             >  1:2785164/1‑91 (MQ=255)

                              aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                            <  1:702583/91‑1 (MQ=255)

                               tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                           >  1:2355082/1‑91 (MQ=255)

                                  ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                        <  1:933648/91‑1 (MQ=255)

                                   tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                       >  1:451213/1‑91 (MQ=255)

                                    aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                      >  1:265050/1‑91 (MQ=255)

                                    aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                      <  1:2563615/91‑1 (MQ=255)

                                     aGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATg                                                     <  1:1420784/91‑1 (MQ=255)

                                      gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                    <  1:1880603/91‑1 (MQ=255)

                                      gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                    <  1:851647/91‑1 (MQ=255)

                                       aCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCa                                                   >  1:3581651/1‑91 (MQ=255)

                                           cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                               <  1:394197/91‑1 (MQ=255)

                                           cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                               >  1:2983855/1‑91 (MQ=255)

                                           cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                               <  1:3364298/91‑1 (MQ=255)

                                           cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                               >  1:3807302/1‑91 (MQ=255)

                                             cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                             >  1:859827/1‑91 (MQ=255)

                                                  ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc                                        >  1:1459841/1‑91 (MQ=255)

                                                  ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc                                        <  1:429967/91‑1 (MQ=255)

                                                     aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                     >  1:1019136/1‑91 (MQ=255)

                                                       gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                   >  1:3613919/1‑91 (MQ=255)

                                                       gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                   <  1:225821/91‑1 (MQ=255)

                                                          aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                >  1:4099503/1‑91 (MQ=255)

                                                          aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                <  1:1172623/91‑1 (MQ=255)

                                                            aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                              <  1:426903/91‑1 (MQ=255)

                                                             aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                             >  1:4008309/1‑91 (MQ=255)

                                                             aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                             >  1:1047356/1‑91 (MQ=255)

                                                             aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                             <  1:2618959/91‑1 (MQ=255)

                                                               ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                           >  1:364292/1‑91 (MQ=255)

                                                               ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                           <  1:2425577/91‑1 (MQ=255)

                                                                taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                          >  1:712636/1‑91 (MQ=255)

                                                                 aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt                         >  1:2369297/1‑91 (MQ=255)

                                                                  aaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                        <  1:3120163/91‑1 (MQ=255)

                                                                    aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                      >  1:2520714/1‑91 (MQ=255)

                                                                    aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                      >  1:328750/1‑91 (MQ=255)

                                                                     ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtagat                     >  1:3878556/1‑87 (MQ=255)

                                                                     ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtagat                     >  1:3879900/1‑87 (MQ=255)

                                                                     ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                     >  1:281035/1‑91 (MQ=255)

                                                                     ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                     >  1:904342/1‑91 (MQ=255)

                                                                       aaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACa                   <  1:3515759/91‑1 (MQ=255)

                                                                         aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtct                 <  1:1407115‑M2/91‑53 (MQ=255)

                                                                         aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                 <  1:663827/91‑1 (MQ=255)

                                                                         aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                 >  1:3665463/1‑91 (MQ=255)

                                                                         aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                 >  1:3890660/1‑91 (MQ=255)

                                                                          cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat                >  1:1212529/1‑91 (MQ=255)

                                                                            aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc              >  1:1527248/1‑91 (MQ=255)

                                                                            aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc              <  1:2343518/91‑1 (MQ=255)

                                                                            aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc              <  1:3028704/91‑1 (MQ=255)

                                                                             aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct             <  1:3484292/91‑1 (MQ=255)

                                                                              gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc            <  1:2213028/91‑1 (MQ=255)

                                                                              gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc            >  1:1324419/1‑91 (MQ=255)

                                                                                 aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa         >  1:3095783/1‑91 (MQ=255)

                                                                                  tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg        >  1:2185532‑M1/1‑7 (MQ=255)

                                                                                  tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg        >  1:2535430‑M1/1‑7 (MQ=255)

                                                                                  tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg        >  1:2185383‑M1/1‑7 (MQ=255)

                                                                                   ccccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa       <  1:1793771/91‑1 (MQ=255)

                                                                                   ccccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa       >  1:3091074/1‑91 (MQ=255)

                                                                                    cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      >  1:1953285‑M1/1‑5 (MQ=255)

                                                                                    cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      <  1:1635212‑M1/91‑87 (MQ=255)

                                                                                    cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      >  1:1953174‑M1/1‑5 (MQ=255)

                                                                                    cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      >  1:1953138‑M1/1‑5 (MQ=255)

                                                                                    cccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      <  1:2896935‑M2/91‑64 (MQ=255)

                                                                                    cccGAAGCACAGAAAATTATACTGTGACtcggggaatactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      <  1:1987328‑M2/91‑64 (MQ=255)

                                                                                    cccGAAGCACAGAAAATTATACTGTGACtcggggaatactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc      <  1:1987330‑M2/91‑64 (MQ=255)

                                                                                    cccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa      >  1:1265504/1‑91 (MQ=255)

                                                                                     ccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa     >  1:751439/1‑91 (MQ=255)

                                                                                      cGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgc    <  1:3980929‑M2/91‑66 (MQ=255)

                                                                                      cGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg    >  1:2034281/1‑91 (MQ=255)

                                                                                       gAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAgg   <  1:2630173/91‑1 (MQ=255)

                                                                                        aaGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctt  <  1:1133202‑M2/91‑68 (MQ=255)

                                                                                        aaGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctt  <  1:1132675‑M2/91‑68 (MQ=255)

TGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGA  >  USA300TCH1516_ALE/1438936‑1439114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.